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Report for CCDS78126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78126.1 Public Homo sapiens 6 BTNL2 24 110 108 CCDS HistoryNCBI Gene:56244Re-query CCDS DB by CCDS ID:78126.1Re-query CCDS DB by GeneID:56244See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 78126.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454136.8 ENSP00000390613.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454136.8Link to Ensembl Protein Viewer:ENSP00000390613.3Re-query CCDS DB by Nucleotide ID:ENST00000454136Re-query CCDS DB by Protein ID:ENSP00000390613
Original member Current member NCBI NM_001304561.2 NP_001291490.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304561.2Link to Protein Sequence:NP_001291490.1Re-query CCDS DB by Nucleotide ID:NM_001304561Re-query CCDS DB by Protein ID:NP_001291490Link to BLAST:NP_001291490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291490.1 482 Q9UIR0-7 482 100% 0 0

Chromosomal Locations for CCDS 78126.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 32393969 32394057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32394744 32395025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32396039 32396386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32401785 32401805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32402935 32403216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32404939 32405286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32407045 32407123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGTGGATTTTCCAGGCTACAATCTGTCTGGTGCAGTCGCCTCCTTCCTATTCATCCTGCTGACAATGA
AGCAGTCAGAAGACTTTAGAGTCATTGGCCCTGCTCATCCTATCCTGGCCGGGGTTGGGGAAGATGCCCT
GTTAACCTGCCAGCTACTCCCCAAGAGGACCACAATGCACGTGGAGGTGAGGTGGTACCGCTCAGAGCCC
AGCACACCTGTGTTTGTGCACAGGGATGGAGTGGAGGTGACTGAGATGCAGATGGAGGAGTACAGAGGCT
GGGTAGAGTGGATAGAGAATGGCATTGCAAAGGGAAATGTGGCACTGAAGATACACAACATCCAGCCCTC
CGACAATGGACAATACTGGTGCCATTTCCAGGATGGGAACTACTGTGGAGAAACAAGCTTGCTGCTCAAA
GTAGCAGGTCTGGGGTCTGCCCCTAGCATCCACATGGAGGGACCTGGGGAGAGTGGAGTCCAGCTTGTGT
GCACTGCAAGGGGCTGGTTCCCAGAGCCCCAGGTGTATTGGGAAGACATCCGGGGAGAGAAGCTGCTGGC
CGTGTCTGAGCATCGCATCCAAGATAAAGATGGCCTGTTCTATGCGGAAGCCACCCTGGTGGTCAGGAAC
GCCTCTGCAGAGTCTGTGTCCTGCTTGGTCCACAACCCCGTCCTCACTGAGGAGAAGGGGTCGGTCATCA
GCCTCCCAGAGAAACTCCAGACTGAGCTGGCTTCTTTAAAAGTGAATGGACCTTCCCAGCCCATCCTCGT
CAGAGTGGGAGAAGATATACAGCTAACCTGTTACCTGTCCCCCAAGGCGAATGCACAGAGCATGGAGGTG
AGGTGGGACCGATCCCACCGTTACCCTGCTGTGCATGTGTATATGGATGGGGACCATGTGGCTGGAGAGC
AGATGGCAGAGTACAGAGGGAGGACTGTACTGGTGAGTGACGCCATTGACGAGGGCAGACTGACCCTGCA
GATACTCAGTGCCAGACCTTCGGACGACGGGCAGTACCGCTGCCTTTTTGAAAAAGATGATGTCTACCAG
GAGGCCAGTTTGGATCTGAAGGTGGTAAGTCTGGGTTCTTCCCCACTGATCACTGTGGAGGGGCAAGAAG
ATGGAGAAATGCAGCCGATGTGCTCTTCAGATGGGTGGTTCCCACAGCCCCACGTGCCATGGAGGGACAT
GGAAGGAAAGACGATACCATCATCTTCCCAGGCCCTGACTCAAGGCAGCCACGGGCTGTTCCACGTGCAG
ACATTGCTAAGGGTCACAAACATCTCCGCTGTGGACGTCACTTGTTCCATCAGCATCCCCTTTTTGGGCG
AGGAGAAAATCGCAACTTTTTCTCTCTCAGAGTCCAGGATGACGTTTTTGTGGAAAACACTGCTTGTTTG
GGGATTGCTTCTTGCTGTGGCTGTAGGCCTGCCCAGGAAGAGGAGCTGA

Translation (482 aa):
MVDFPGYNLSGAVASFLFILLTMKQSEDFRVIGPAHPILAGVGEDALLTCQLLPKRTTMHVEVRWYRSEP
STPVFVHRDGVEVTEMQMEEYRGWVEWIENGIAKGNVALKIHNIQPSDNGQYWCHFQDGNYCGETSLLLK
VAGLGSAPSIHMEGPGESGVQLVCTARGWFPEPQVYWEDIRGEKLLAVSEHRIQDKDGLFYAEATLVVRN
ASAESVSCLVHNPVLTEEKGSVISLPEKLQTELASLKVNGPSQPILVRVGEDIQLTCYLSPKANAQSMEV
RWDRSHRYPAVHVYMDGDHVAGEQMAEYRGRTVLVSDAIDEGRLTLQILSARPSDDGQYRCLFEKDDVYQ
EASLDLKVVSLGSSPLITVEGQEDGEMQPMCSSDGWFPQPHVPWRDMEGKTIPSSSQALTQGSHGLFHVQ
TLLRVTNISAVDVTCSISIPFLGEEKIATFSLSESRMTFLWKTLLVWGLLLAVAVGLPRKRS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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