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Report for CCDS1760.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1760.3 Public Homo sapiens 2 GPN1 24 110 108 CCDS HistoryNCBI Gene:11321Re-query CCDS DB by CCDS ID:1760.3Re-query CCDS DB by GeneID:11321See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 1760.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1760.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610189.2 ENSP00000476446.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610189.2Link to Ensembl Protein Viewer:ENSP00000476446.1Re-query CCDS DB by Nucleotide ID:ENST00000610189Re-query CCDS DB by Protein ID:ENSP00000476446
Original member Current member NCBI NM_007266.4 NP_009197.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007266.4Link to Protein Sequence:NP_009197.3Re-query CCDS DB by Nucleotide ID:NM_007266Re-query CCDS DB by Protein ID:NP_009197Link to BLAST:NP_009197.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009197.3 374 Q9HCN4-1 374 100% 0 0

Chromosomal Locations for CCDS 1760.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27629059 27629169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27629859 27629952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27631027 27631066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27631834 27631900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27632633 27632670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27634846 27634924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27635140 27635234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27638210 27638255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27638885 27639031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27640043 27640125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27641240 27641279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27642429 27642519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27647836 27647943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27650115 27650200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGCGGCGTCCGCAGCTGCCGCTGAGCTCCAGGCTTCTGGGGGTCCGCGGCACCCAGTGTGTCTGTTGG
TGTTGGGAATGGCGGGATCCGGGAAAACCACTTTTGTACAGAGGCTCACAGGACACCTGCATGCCCAAGG
CACTCCACCGTATGTGATCAACCTGGATCCAGCAGTACATGAAGTTCCCTTTCCTGCCAATATTGATATT
CGTGATACTGTAAAGTATAAAGAAGTAATGAAACAATATGGACTTGGACCCAATGGCGGCATAGTGACCT
CACTCAATCTCTTTGCTACCAGATTTGATCAGGTGATGAAATTTATTGAGAAGGCCCAGAACATGTCCAA
ATATGTGTTGATTGACACACCTGGACAGATTGAGGTATTCACCTGGTCAGCTTCTGGGACAATTATCACT
GAAGCCCTTGCATCCTCATTTCCAACAGTTGTCATCTATGTAATGGACACATCGAGAAGTACCAACCCAG
TGACCTTCATGTCCAACATGCTCTATGCCTGCAGCATCTTATACAAAACCAAGCTGCCTTTCATTGTGGT
CATGAATAAAACTGACATCATTGACCACAGCTTTGCAGTGGAATGGATGCAGGATTTTGAGGCTTTCCAA
GATGCCTTGAATCAAGAGACTACATACGTCAGTAACCTGACTCGTTCAATGAGCCTGGTGTTAGATGAGT
TTTACAGCTCACTCAGGGTGGTGGGTGTCTCTGCTGTTCTGGGTACTGGATTAGATGAACTCTTTGTGCA
AGTTACCAGTGCTGCCGAAGAATATGAAAGGGAGTATCGTCCTGAATATGAACGTCTGAAAAAATCACTG
GCCAACGCAGAGAGCCAACAGCAGAGAGAACAACTGGAACGCCTTCGAAAAGATATGGGTTCTGTAGCCT
TGGATGCAGGGACTGCCAAAGACAGCTTATCTCCTGTGCTGCACCCTTCTGATTTGATCCTGACTCGAGG
AACCTTGGATGAAGAGGATGAGGAAGCAGACAGCGATACTGATGACATTGACCACAGAGTTACAGAGGAA
AGCCATGAAGAGCCAGCATTCCAGAATTTTATGCAAGAATCGATGGCACAATACTGGAAGAGAAACAATA
AATAG

Translation (374 aa):
MAASAAAAELQASGGPRHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDI
RDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIIT
EALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQ
DALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSL
ANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEEADSDTDDIDHRVTEE
SHEEPAFQNFMQESMAQYWKRNNK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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