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Report for CCDS8811.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8811.3 Public Homo sapiens 12 BIN2 24 110 108 CCDS HistoryNCBI Gene:51411Re-query CCDS DB by CCDS ID:8811.3Re-query CCDS DB by GeneID:51411See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 8811.1
The coding region has been updated to shorten the N-terminus of the encoded protein to one that is more supported by conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8811.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615107.6 ENSP00000483983.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000615107.6Link to Ensembl Protein Viewer:ENSP00000483983.2Re-query CCDS DB by Nucleotide ID:ENST00000615107Re-query CCDS DB by Protein ID:ENSP00000483983
Original member Current member NCBI NM_016293.4 NP_057377.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016293.4Link to Protein Sequence:NP_057377.4Re-query CCDS DB by Nucleotide ID:NM_016293Re-query CCDS DB by Protein ID:NP_057377Link to BLAST:NP_057377.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057377.4 565 Q9UBW5-1 565 100% 0 0

Chromosomal Locations for CCDS 8811.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51281499 51281528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51284716 51284787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51288108 51288188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51291591 51292344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51295796 51295878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51297089 51297164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51299203 51299288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51299607 51299714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51302020 51302115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51302686 51302780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51303087 51303141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51313823 51313903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51324022 51324102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGGCAGAGGGCAAGGCAGGCGGCGCGGCCGGCCTCTTCGCCAAGCAGGTGCAGAAGAAGTTTAGCAGGG
CCCAGGAGAAGGTGCTGCAGAAATTGGGGAAAGCTGTAGAAACCAAAGATGAACGATTTGAACAAAGCGC
TAGCAACTTCTACCAACAACAGGCAGAAGGCCACAAGCTGTACAAGGACCTGAAGAACTTCCTTAGTGCA
GTCAAAGTGATGCATGAAAGTTCAAAAAGAGTGTCAGAAACCCTGCAGGAGATCTACAGCAGCGAGTGGG
ACGGTCATGAGGAGCTGAAGGCCATCGTATGGAATAATGATCTCCTTTGGGAAGACTACGAGGAGAAACT
GGCTGACCAGGCTGTAAGGACCATGGAAATCTATGTTGCCCAGTTCAGTGAAATTAAGGAGAGAATTGCC
AAGCGGGGTCGGAAACTCGTGGACTATGACAGTGCCCGACACCACCTGGAGGCAGTGCAGAATGCCAAGA
AGAAAGATGAGGCCAAGACTGCCAAGGCAGAGGAAGAGTTCAACAAAGCCCAGACTGTGTTTGAAGATCT
GAACCAAGAACTACTAGAGGAGCTGCCTATTCTTTATAATAGTCGTATTGGCTGCTATGTGACCATCTTC
CAAAACATTTCCAACTTGAGGGATGTCTTCTACAGGGAAATGAGCAAGCTGAACCACAATCTCTACGAGG
TGATGAGCAAACTGGAGAAGCAACATTCCAATAAAGTCTTTGTGGTGAAGGGACTGTCAAGCAGCAGCAG
GCGCTCTTTAGTCATTTCTCCCCCAGTTCGAACAGCTACAGTCTCCAGTCCTCTTACCTCACCTACTAGT
CCCTCTACACTTTCCTTGAAGAGTGAGAGTGAATCTGTCTCAGCAACTGAAGATCTGGCACCTGATGCAG
CCCAAGGGGAAGACAATTCTGAGATCAAGGAGCTCTTAGAAGAGGAGGAAATAGAGAAGGAAGGATCTGA
AGCAAGCTCCTCTGAGGAAGATGAGCCTCTACCAGCCTGCAATGGCCCCGCCCAGGCCCAGCCCTCTCCT
ACCACTGAAAGGGCCAAGTCCCAGGAGGAAGTTCTCCCCAGCTCCACAACTCCATCACCAGGCGGAGCCC
TGAGCCCTTCAGGGCAGCCTTCATCATCTGCCACAGAAGTAGTCCTCCGAACCCGCACCGCAAGTGAAGG
ATCTGAACAACCAAAGAAGAGAGCCTCTATCCAGAGGACCTCAGCACCCCCTAGTAGGCCTCCTCCACCC
AGAGCCACTGCAAGCCCCAGGCCCTCCTCAGGGAACATACCTTCCAGCCCTACAGCCTCTGGAGGGGGTT
CACCCACCAGCCCTAGGGCCTCCTTGGGGACTGGGACTGCAAGTCCTAGGACCTCCCTAGAGGTCTCTCC
TAATCCAGAACCACCAGAGAAGCCAGTAAGAACTCCTGAGGCCAAAGAAAATGAAAACATCCACAATCAG
AACCCTGAAGAACTTTGTACTTCCCCCACCTTAATGACATCTCAGGTTGCTTCAGAGCCTGGAGAGGCAA
AGAAGATGGAAGACAAGGAAAAGGATAATAAGCTTATCTCAGCTAACTCCTCGGAGGGCCAAGACCAGCT
TCAAGTCTCCATGGTACCAGAAAACAACAACCTCACAGCACCTGAACCTCAAGAAGAGGTATCCACAAGT
GAAAATCCACAACTCTGA

Translation (565 aa):
MAEGKAGGAAGLFAKQVQKKFSRAQEKVLQKLGKAVETKDERFEQSASNFYQQQAEGHKLYKDLKNFLSA
VKVMHESSKRVSETLQEIYSSEWDGHEELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIA
KRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIF
QNISNLRDVFYREMSKLNHNLYEVMSKLEKQHSNKVFVVKGLSSSSRRSLVISPPVRTATVSSPLTSPTS
PSTLSLKSESESVSATEDLAPDAAQGEDNSEIKELLEEEEIEKEGSEASSSEEDEPLPACNGPAQAQPSP
TTERAKSQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEGSEQPKKRASIQRTSAPPSRPPPP
RATASPRPSSGNIPSSPTASGGGSPTSPRASLGTGTASPRTSLEVSPNPEPPEKPVRTPEAKENENIHNQ
NPEELCTSPTLMTSQVASEPGEAKKMEDKEKDNKLISANSSEGQDQLQVSMVPENNNLTAPEPQEEVSTS
ENPQL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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