NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15075.1 Public Mus musculus 1 Chpf 23 108 98 CCDS HistoryNCBI Gene:74241Re-query CCDS DB by CCDS ID:15075.1Re-query CCDS DB by GeneID:74241See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094818.3 ENSMUSP00000092412.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094818.3Link to Ensembl Protein Viewer:ENSMUSP00000092412.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000094818Re-query CCDS DB by Protein ID:ENSMUSP00000092412
Original member Current member NCBI NM_001001565.2 NP_001001565.1 Accepted alive Link to Nucleotide Sequence:NM_001001565.2Link to Protein Sequence:NP_001001565.1Re-query CCDS DB by Nucleotide ID:NM_001001565Re-query CCDS DB by Protein ID:NP_001001565Link to BLAST:NP_001001565.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001565.1 612 Q6IQX7-3 612 100% 0 0

Chromosomal Locations for CCDS 15075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75474970 75476226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75476560 75476739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75477245 75477646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGGCGGTGGTGGCACTGGGCGAAGAGAGGCCCATCGGACACCTGCACCTGGCGCTGCGCCACCTGCTGG
AGCAACACGGCGATGACTTTGACTGGTTTTTCCTAGTGCCTGATGCCACCTATACTGAAGCGCATGGACT
GGACCGCCTAGCTGGCCACCTCAGCCTTGCTTCAGCAACCCATCTCTATCTTGGCCGGCCGCAGGACTTC
ATCGGTGGAGATACTACCCCAGGCCGCTACTGCCACGGGGGCTTTGGAGTCTTGCTCTCTCGCACACTGC
TACAGCAACTGCGCCCCCACCTGGAAAGCTGCCGCAACGACATCGTCAGTGCTCGCCCGGATGAGTGGTT
GGGCCGCTGCATCCTTGATGCCACAGGCGTGGGCTGTACTGGTGACCACGAGGGAATGCACTACAACTAC
CTGGAACTGAGCCCCGGGGAGCCTGTGCAGGAGGGGGACCCTCGTTTCCGCAGCGCCTTGACAGCCCATC
CCGTGCGTGACCCTGTGCACATGTACCAGCTGCACAAAGCTTTTGCCCGCGCTGAGCTGGACCGCACGTA
CCAGGAGATTCAAGAATTGCAGTGGGAGATCCAGAATACCAGCCGACTGGCTGCTGATGGGGAGAGAGCC
TCTGCCTGGCCAGTGGGCATCCCAGCACCGTCTCGCCCTGCCTCACGCTTTGAGGTTCTGCGCTGGGACT
ACTTCACAGAACAATACGCGTTCTCCTGCGCCGATGGCTCTCCCCGCTGCCCGTTGCGTGGGGCCGACCA
GGCTGATGTGGCTGACGTCCTGGGGACAGCCTTAGAGGAGCTCAACCGCCGTTACCAGCCAGCGCTGCAG
CTCCAGAAGCAACAGCTGGTGAACGGCTACCGGCGTTTTGATCCAGCCCGAGGCATGGAGTACACACTAG
ACCTGCAGCTGGAAGCGCTGACACCCCAGGGTGGCCGCTGGCCCCTCACCCGCAGGGTGCAGCTCCTTCG
GCCCTTGAGCCGAGTGGAGATCTTGCCTGTACCCTATGTCACCGAGGCTTCTCGGCTCACTGTGCTACTG
CCGCTGGCTGCAGCGGAACGAGACCTGGCTTCTGGCTTCTTAGAAGCCTTTGCCACTGCAGCCCTGGAAC
CTGGTGATGCAGCAGCCTTGACCCTGCTGCTGCTGTATGAGCCACGCCAGGCCCAGCGGGCAGCCCACTC
AGACGTCTTCGCACCTGTCAAGGCCCACGTGGCAGAGCTAGAGCGGCGTTTCCCTGGTGCCCGGGTGCCC
TGGCTCAGTGTGCAGACAGCAGCGCCCTCTCCACTGCGTCTCATGGATCTGCTGTCCAAGAAGCACCCAC
TAGACACTCTGTTCCTGCTGGCCGGGCCAGACACGGTACTCACACCTGATTTCCTGAACCGCTGCCGCAT
GCATGCCATCTCTGGCTGGCAGGCCTTCTTCCCCATGCACTTCCAGGCCTTCCACCCTGCTGTGGCTCCA
CCTCAGGGCCCTGGGCCACCAGAGCTGGGCCGTGACACCGGTCACTTTGATCGCCAGGCTGCCAGTGAGG
CATGCTTCTACAACTCCGACTATGTGGCGGCCCGTGGCCGGCTGGTGGCGGCCTCGGAGCAGGAGGAGGA
GCTGCTGGAGAGCCTGGATGTGTACGAGTTGTTTCTGCGCTTCTCCAACTTGCACGTGCTGAGAGCAGTA
GAGCCAGCCTTGCTGCAGCGCTACCGGGCCCAGCCGTGCAGTGCACGGCTCAGTGAAGACCTTTACCACC
GCTGTCGCCAGAGCGTACTTGAGGGCCTTGGCTCCCGCACCCAGCTTGCCATGCTGCTCTTTGAGCAGGA
ACAGGGGAACAGCACCTAA

Translation (612 aa):
MAVVALGEERPIGHLHLALRHLLEQHGDDFDWFFLVPDATYTEAHGLDRLAGHLSLASATHLYLGRPQDF
IGGDTTPGRYCHGGFGVLLSRTLLQQLRPHLESCRNDIVSARPDEWLGRCILDATGVGCTGDHEGMHYNY
LELSPGEPVQEGDPRFRSALTAHPVRDPVHMYQLHKAFARAELDRTYQEIQELQWEIQNTSRLAADGERA
SAWPVGIPAPSRPASRFEVLRWDYFTEQYAFSCADGSPRCPLRGADQADVADVLGTALEELNRRYQPALQ
LQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRWPLTRRVQLLRPLSRVEILPVPYVTEASRLTVLL
PLAAAERDLASGFLEAFATAALEPGDAAALTLLLLYEPRQAQRAAHSDVFAPVKAHVAELERRFPGARVP
WLSVQTAAPSPLRLMDLLSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAP
PQGPGPPELGRDTGHFDRQAASEACFYNSDYVAARGRLVAASEQEEELLESLDVYELFLRFSNLHVLRAV
EPALLQRYRAQPCSARLSEDLYHRCRQSVLEGLGSRTQLAMLLFEQEQGNST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH