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Report for CCDS51722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51722.1 Public Mus musculus 6 Vwde 23 108 98 CCDS HistoryNCBI Gene:232585Re-query CCDS DB by CCDS ID:51722.1Re-query CCDS DB by GeneID:232585See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054530.6 ENSMUSP00000058110.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054530.6Link to Ensembl Protein Viewer:ENSMUSP00000058110.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054530Re-query CCDS DB by Protein ID:ENSMUSP00000058110
Original member Current member NCBI NM_001013757.2 NP_001013779.2 Accepted alive Link to Nucleotide Sequence:NM_001013757.2Link to Protein Sequence:NP_001013779.2Re-query CCDS DB by Nucleotide ID:NM_001013757Re-query CCDS DB by Protein ID:NP_001013779Link to BLAST:NP_001013779.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013779.2 926 Q6DFV8 926 100% 0 0

Chromosomal Locations for CCDS 51722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 13186706 13187672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13187813 13188018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13190483 13190756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13192569 13192642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13193079 13193293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13195980 13196124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13204981 13205070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13205737 13205993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13208329 13208394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13215569 13215800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13219896 13220080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13224794 13224863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGAGGGGCGGAGCCTGGGCACGGCTGGTGACTGCGCTGATGCTCCTGGTCCAGGGAAAATGCCAGCAAG
CTCAGGAGTGCTCTCCTGGGGGCCACCGGATTCTTCAGAGTCCTTACAGAAGTGTTCACTTTGACTCAGT
CTATCTCCAGTATTCAGCTGTTCAAGACCTGATCTGTGACCATTCTCTCTCCCCTGGTTGGTACCGATTT
CTTATCTTTGACAGACCCGCTGAGATGCCAACCAAGTGTGTTGAGATGAACCACTGCGGGACTCAGGCCC
CCATCTGGCTGTCTCTGAGTGATTCAGAAGCTCTGCCTCTTCCTGGAGAGATGAAGAAACTGACAGCTTG
TGCCACTTGGCAGTTTTTATTTAGCACTGAAAAAGACTGCTGCCTCTTTCAAATCCCTGTGTCTGTAAGA
AACTGTGGGGATTTTTTTGTTTACTTACTGCAACCCACTCAGGGATGTATGGGCTACTGTGCTGAAGCTA
TTTCTGATGTGAAGTTACACACATGTGGCCCTGGAGAAACAGAAAACGAAGGTGGCTGTGTTGGCCAGCT
CTCCATGGCACAGCCTCCTGCTCCTCCTGCTCCTCCAGGCAGGCCCAAGATCTCAGTGGAGCTCCTGGGC
TCCCTGGTGTTTTGTAGGTGTACTTTTGATGTTTCCCCCACAAACACCTCAGTAGGATTTCTGATAGCCT
GGTCTAGGCTTTCTTCCCAAGAAATCAAAGAAGAGCTGAGACAGGAGAGCACTCTTCAGGCGTTCTCGCT
TTTAGAGCTTGATGGCATAAATCTCAGACTTGGAGATACGATATTCTGCAGTGCTGCCGTCTTTTACTTG
GAGAAACCAGATGTGCAAAGTATAGCGGTGGAAAGCCAGGAATTTTTTGCTGGAATTAAGTTAAAACCTG
AACTGGACACTATATCAGAAGATGGAAAGGAATACCAGCTGAAGATAGAGAGTACAATTCCTATTGTTTG
CTCGGAGTTTAGTGAGCTTGATCAAGGATGCAAAATCTCATTAAAACTGAAAACCATTGAACAAGGTAAA
GAACACCTTGGTTTAAATTTGGCATTGTCTTCCTGCCATGTGGATCTTCACCAGAACTCTTGTGCCAATG
GAATATGCAGCCAGGCTGTATTGTACTACACTGCTGTGACAGACTTTTCCCGGGATGGAGACAGAGTTAC
AGACATCATTGTGGAACCTATAGTCAATGATGTTTTCCTGTGGGACAGATACGCTCCAGACAGCATCCAG
ATCAAAGTCAAGGATGTGCCATCTGCTTACTGCTATTCATTTACTGACCCACACATAATTACCTTTGATG
GCAGAGTATATGACAACTTCAAGACTGGAACATTTGTCCTTTATAAGAGCATGTCACGTGATTTTGAAAT
CCATGTACGTCAGTGGAACTGTGGGAGCCTTCACTATTCTGTGTCATGCAACTGTGGCTTTGTTGCAAAA
GAAGAAGGTGACATCGTTACTTTTGATATGTGCAGTGGCCAGTTACATGAATCCCCGTCATATTTATTTG
TAAAGAACCAAGAGTCATCATCAAGCAATATCAGAATAACTGAATCTTATTTAGGAAGAAAAATCACGAT
TTGGTTTTCCTCTGGAGCGTTCATCCGCGCTGACCTCAGTGAGTGGGGTATGAGTATAACACTCCGAGTC
CCTAGTTTAGATTACAGAAGCACATTAGGACTTTGTGGCACCTTCGATGAAAACCCAGAAAATGATTTCC
ATGACAAGAACGGGATCAAAATTGATCACGACGACAATTATATTGCTTTTATCAATGAATGGAGGCTTCA
ACCAGGAAGAAGCATGTTTGACAAAGTACCGGCTTCCTCACGGTTTCCTGCAAAACCATCCTACTGCAGC
TGCTGGTTGGGTACTGCCATGCATCATCTACTTTCTCACCATCTGGACAGCAGATCTCACTTAGAAATGG
CTTCCGGCTGCAAAGGCATCAAGCACCTTCAGTTCTCTTCCTTGATACCAGACCTAGATATCACCTCTGA
ATATATCAATTCCGAAGCTCTTGCTGGAAAACTAAGCCCTCATGTACCTAGAGAAGAAAATAATTTGAAT
TTCTTACTACAGAAAAATGCCCACCCAAACCTATCCAAACTGGACTTAAATTTACCGCATCCTGGTAATA
AGATACTAAATCCTCCTGCATATTTAAGTGATGAGAGGCATACACAGGACCAGGAAATGAGGAAGAGTCT
ACAAAACAGATGGAAACGACAAAATGTGAAGGACTTTCATCCCGTCTATATTTTCCAGAGTCTTGGACAA
GGCAACCTGGAAGAGTTTTCTTATTTTTTCCCTGAGGACCACACTGAGGACAGCCAGCCGGAGTTTGCCC
CCTCGTGGCCCACAGCATCGGGCCTCACTGAATTCAGCGTCTTGGCAATCTGTCAGCAGACTCTAGCCAA
CTCCAGCATTGGAAGGCTCTGTCTTCCCTTTCTCGGCAGGACACTGAACCATGTTGTGGACATGTGTGTG
AAGGATGTTCTGTTAAAGGATGACGTGAACTGGGCAGAGGGAGGAGTGGCCTTGTTAGAAAATGAATGTG
AGAGACGCGTTTTAGAAGATGGAAAACGCAATGTAGAAGAAAACAGGAAGACAGTAGAAGGCATTCTGGA
AGTGTTAAAATGTCCCAATTTATGCAGTGGACATGGAGAGTGTATGGGCTGGGGCTGTGTGTGTTCTCCA
GGCTACAGTTCCTATGACTGCAGTCATTCGTATGGTATGCAAATGCTCTGA

Translation (926 aa):
MRGGAWARLVTALMLLVQGKCQQAQECSPGGHRILQSPYRSVHFDSVYLQYSAVQDLICDHSLSPGWYRF
LIFDRPAEMPTKCVEMNHCGTQAPIWLSLSDSEALPLPGEMKKLTACATWQFLFSTEKDCCLFQIPVSVR
NCGDFFVYLLQPTQGCMGYCAEAISDVKLHTCGPGETENEGGCVGQLSMAQPPAPPAPPGRPKISVELLG
SLVFCRCTFDVSPTNTSVGFLIAWSRLSSQEIKEELRQESTLQAFSLLELDGINLRLGDTIFCSAAVFYL
EKPDVQSIAVESQEFFAGIKLKPELDTISEDGKEYQLKIESTIPIVCSEFSELDQGCKISLKLKTIEQGK
EHLGLNLALSSCHVDLHQNSCANGICSQAVLYYTAVTDFSRDGDRVTDIIVEPIVNDVFLWDRYAPDSIQ
IKVKDVPSAYCYSFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEIHVRQWNCGSLHYSVSCNCGFVAK
EEGDIVTFDMCSGQLHESPSYLFVKNQESSSSNIRITESYLGRKITIWFSSGAFIRADLSEWGMSITLRV
PSLDYRSTLGLCGTFDENPENDFHDKNGIKIDHDDNYIAFINEWRLQPGRSMFDKVPASSRFPAKPSYCS
CWLGTAMHHLLSHHLDSRSHLEMASGCKGIKHLQFSSLIPDLDITSEYINSEALAGKLSPHVPREENNLN
FLLQKNAHPNLSKLDLNLPHPGNKILNPPAYLSDERHTQDQEMRKSLQNRWKRQNVKDFHPVYIFQSLGQ
GNLEEFSYFFPEDHTEDSQPEFAPSWPTASGLTEFSVLAICQQTLANSSIGRLCLPFLGRTLNHVVDMCV
KDVLLKDDVNWAEGGVALLENECERRVLEDGKRNVEENRKTVEGILEVLKCPNLCSGHGECMGWGCVCSP
GYSSYDCSHSYGMQML


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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