NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22974.1 Public Mus musculus 9 Pknox2 23 108 98 CCDS HistoryNCBI Gene:208076Re-query CCDS DB by CCDS ID:22974.1Re-query CCDS DB by GeneID:208076See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039674.12 ENSMUSP00000035806.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039674.12Link to Ensembl Protein Viewer:ENSMUSP00000035806.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039674Re-query CCDS DB by Protein ID:ENSMUSP00000035806
Original member Current member EBI ENSMUST00000080754.11 ENSMUSP00000079578.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080754.11Link to Ensembl Protein Viewer:ENSMUSP00000079578.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080754Re-query CCDS DB by Protein ID:ENSMUSP00000079578
Original member Current member EBI ENSMUST00000177218.7 ENSMUSP00000135581.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177218.7Link to Ensembl Protein Viewer:ENSMUSP00000135581.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177218Re-query CCDS DB by Protein ID:ENSMUSP00000135581
Original member NCBI NM_001029838.2 NP_001025009.1 Updated not alive Link to Nucleotide Sequence:NM_001029838.2Link to Protein Sequence:NP_001025009.1Re-query CCDS DB by Nucleotide ID:NM_001029838Re-query CCDS DB by Protein ID:NP_001025009
Current member NCBI NM_001029838.3 NP_001025009.1 Accepted alive Link to Nucleotide Sequence:NM_001029838.3Link to Protein Sequence:NP_001025009.1Re-query CCDS DB by Nucleotide ID:NM_001029838Re-query CCDS DB by Protein ID:NP_001025009Link to BLAST:NP_001025009.1
Original member NCBI NM_148950.3 NP_683752.2 Updated not alive Link to Nucleotide Sequence:NM_148950.3Link to Protein Sequence:NP_683752.2Re-query CCDS DB by Nucleotide ID:NM_148950Re-query CCDS DB by Protein ID:NP_683752
Current member NCBI NM_148950.4 NP_683752.2 Accepted alive Link to Nucleotide Sequence:NM_148950.4Link to Protein Sequence:NP_683752.2Re-query CCDS DB by Nucleotide ID:NM_148950Re-query CCDS DB by Protein ID:NP_683752Link to BLAST:NP_683752.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025009.1 474 Q8BG99 474 100% 0 0
NP_683752.2 474 Q8BG99 474 100% 0 0

Chromosomal Locations for CCDS 22974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 36892825 36893057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36894320 36894498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36895311 36895387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36909629 36909748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36910512 36910609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36911134 36911263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36923584 36923772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36936321 36936492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36954693 36954832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36968378 36968464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGATGCAACATGCCTCCCCAGCCCCAGCTCTGACAATGATGGCCACGCAGAATGTCCCTCCCCCACCCT
ACCAGGACAGCCCCCAGATGACAGCAACTGCCCAGCCACCTTCCAAGGCCCAGGCTGTCCACATCTCAGC
ACCCTCAGCTACCGCCAGCACACCTGTGCCCAGTGCCCCCATTGATCCCCAAGCCCAGCTGGAGGCTGAC
AAGCGAGCTGTGTACAGGCACCCTCTTTTCCCGCTCCTGACGCTGCTGTTTGAGAAATGTGAACAGGCCA
CCCAGGGCTCCGAGTGCATCACCTCCGCCAGCTTTGATGTGGACATCGAGAACTTTGTCCACCAGCAGGA
GCAGGAACACAAACCCTTCTTCAGCGATGACCCAGAACTGGACAATCTGATGGTGAAGGCAATCCAGGTC
CTGAGGATCCACCTGCTAGAGTTGGAGAAAGTCAATGAGCTCTGCAAGGACTTTTGCAACCGTTACATCA
CCTGCCTCAAAACCAAGATGCACAGTGATAACCTGCTCAGGAATGACCTCGGGGGGCCCTACTCCCCCAA
CCAGCCCTCCATAAACCTTCACTCACAGGACCTCCTGCAGAATTCCCCCAATTCAATGTCTGGAGTCTCC
AATAACCCCCAGGGGATTGTGGTCCCAGCCTCAGCACTCCAGCAGGGCAACATCGCCATGACAACCGTCA
ATTCTCAAGTCGTGTCAGGTGGAGCCTTATATCAGCCGGTTACCATGGTAACCTCCCAAGGTCAGGTGGT
CACCCAAGCAATCCCCCAGGGAGCCATCCAGATCCAGAATACACAGGTTAACCTTGACCTCACCTCCCTC
CTGGACAATGAGGATAAGAAGTCCAAGAACAAACGAGGAGTCTTGCCCAAGCATGCCACCAATATAATGC
GTTCTTGGCTCTTCCAGCATCTCATGCACCCCTATCCCACTGAAGATGAGAAGAGGCAGATTGCCGCGCA
GACAAACCTCACCCTTCTGCAAGTAAACAACTGGTTCATCAATGCCAGGAGGCGCATCCTGCAGCCCATG
CTTGATGCCAGCAACCCAGATCCTGCTCCCAAAGCCAAGAAAATCAAGTCTCAGCACCGGCCCACCCAAA
GATTCTGGCCCAATTCCATTGCTGCTGGGGTTCTGCAACAGCAGGGTGGCACCCCAGGGACGAACCCTGA
TGGTTCCATCAACTTGGACAACCTGCAGTCCCTGTCCTCAGACAATGCCACCATGGCCATGCAGCAGGCA
ATGATGGCTGCACATGATGATTCATTGGATGGCACGGAAGAAGAGGATGAAGATGATATGGAGGAGGAGG
AAGAGGAGGAGGAGGAGCTAGAGGAGGAGGCTGATGAGCTACAGACAACGAATGTCAGCGACCTGGGCTT
GGAACACAGTGACTCCCTGGAGTAG

Translation (474 aa):
MMQHASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQAVHISAPSATASTPVPSAPIDPQAQLEAD
KRAVYRHPLFPLLTLLFEKCEQATQGSECITSASFDVDIENFVHQQEQEHKPFFSDDPELDNLMVKAIQV
LRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHSQDLLQNSPNSMSGVS
NNPQGIVVPASALQQGNIAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLTSL
LDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPM
LDASNPDPAPKAKKIKSQHRPTQRFWPNSIAAGVLQQQGGTPGTNPDGSINLDNLQSLSSDNATMAMQQA
MMAAHDDSLDGTEEEDEDDMEEEEEEEEELEEEADELQTTNVSDLGLEHSDSLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH