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Report for CCDS24810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24810.1 Public Mus musculus 11 Slc47a2 23 108 98 CCDS HistoryNCBI Gene:380701Re-query CCDS DB by CCDS ID:24810.1Re-query CCDS DB by GeneID:380701See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093029.8 ENSMUSP00000090710.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093029.8Link to Ensembl Protein Viewer:ENSMUSP00000090710.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093029Re-query CCDS DB by Protein ID:ENSMUSP00000090710
Original member Current member NCBI NM_001033542.2 NP_001028714.1 Accepted alive Link to Nucleotide Sequence:NM_001033542.2Link to Protein Sequence:NP_001028714.1Re-query CCDS DB by Nucleotide ID:NM_001033542Re-query CCDS DB by Protein ID:NP_001028714Link to BLAST:NP_001028714.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028714.1 573 Q3V050 573 100% 0 0

Chromosomal Locations for CCDS 24810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61302204 61302439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61302701 61302755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61303921 61304015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61307532 61307664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61308866 61308935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61309961 61310036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61310735 61310843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61312790 61312857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61313644 61313757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61325797 61325894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61328528 61328625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61329761 61329805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61336216 61336258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61336815 61336963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61338017 61338085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61342439 61342540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61342617 61342778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGGAGCCGGCCGAGGACAGCCTGGGAGCCACCATCCAGCCCCCGGAGCTGGTCCGCGTCCCACGGGGGC
GCAGTCTGAGGATCCTGCTGGGCCTTCGAGGAGCGCTGTCCCCCGACGTGAGACGGGAGGCGGCCGCGCT
AGTGGCGCTCGCGGGCCCGGTGTTCCTGGCGCAGCTGATGATCTTTCTCATCAGCATCGTCAGTTCCATC
TTCTGCGGACACCTGGGCAAAGTCGAGTTGGACGCCGTGACACTCGCTGTTTCCGTTGTGAATGTCACTG
GAATTTCAGTAGGGACTGGCTTGGCCTCGGCTTGTGACACACTGATGTCTCAGTCCTTTGGAGGCAAGAA
CTTGAAGCGCGTGGGGGTCATACTCCAAAGGGGCATCCTCATCCTGCTGCTCTGCTGCTTCCCATGCTGG
GCCATCTTCCTCAACACCGAGCGCCTGCTGCTGCTCCTAAGGCAGGACCCGGATGTCGCCAGGCTAGCCC
AGGTTTATGTGATGATATGCATCCCTGCTCTTCCTGCAGCGTTCCTATTCCAGCTGCAGACGCGGTATTT
ACAGAGCCAGGGCATCATTATGCCCCAAGTTATTGTTGGGATCGCAGCAAATGTCGTCAACGTGGGCATG
AACGCCTTCTTGCTGTATGCCTTGGACCTCGGAGTGGTAGGGTCGGCCTGGGCCAACACCACCTCTCAGT
TCTTCCTGTCTGCCCTGCTTTTCCTCTACGTGTGGTGGAAGAGAATCCACATCCACACTTGGGGAGGGTG
GACAAGGGAGTGCTTCCAGGAGTGGAGCTCCTACACGCGCCTGGCCATCCCCAGTATGTTCATGGTGTGC
ATCGAGTGGTGGACCTTCGAGATTGGGACCTTCCTTGCAGGCCTTGTTAATGTGACAGAACTGGGAGCCC
AGGCCGTCATCTATGAACTGGCTTCTGTCGCCTACATGGTGCCCTTTGGCTTTGGTGTGGCTGCCAGCGT
CCGAGTGGGCAATGCTCTGGGGGCAGGGAACGCTGACCAGGCCCGGTGTTCCTGTACCACTGTTCTTCTG
TGTGCTGGTGTCTGTGCACTCCTGGTGGGGATTCTGCTCGCAGCCTTGAAGGATGTGGTTGCCTACATCT
TCACCAATGACAAGGACATCATTTCCCTTGTGAGTCAAGTGATGCCCATTTTTGCTCCCTTTCATCTCTT
TGATGCACTTGCGGGCACCTGTGGCGGGGTCCTGAGAGGCACGGGAAAACAAAAGATAGGCGCTGTCCTG
AACACTATCGGTTACTACGGGTTTGGTTTTCCTATTGGAGTGTCCCTGATGTTTGCTGCTAAGCTTGGGA
TAATAGGCCTCTGGGCTGGACTGATAGTCTGTGTCTCCTTCCAAGCCTTCTCCTATTTAATCTACATCCT
GAGGACAAACTGGAGCAGAGTCGCAGAGCAGGCACAAGTTCGAGCTGGGCTAAAAAGCACCAAGGAGTTG
ATACCCACGCCAGCAGATCTGCCCATCTTGGAAAGAGAAGTTATGGATGGAGTGATTTTGCCTGATATCA
TCAGGCCAGAGAGTCAGACCGGCCAGCTGGTGGTGGAAGAGAACAGCCAGTGTGCAGTGCCCACCGTTGG
GGAGGTCTTGACGGGGAGACAGCTGGTTTTCTATCGTGGGATGGCTCTGACTGTTTCTGTTGCTGTCCTC
ATAGCAGGGATTGTGGTGCGAGTTTTCAATGACCGTGGCTAA

Translation (573 aa):
MEPAEDSLGATIQPPELVRVPRGRSLRILLGLRGALSPDVRREAAALVALAGPVFLAQLMIFLISIVSSI
FCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCW
AIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGM
NAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVC
IEWWTFEIGTFLAGLVNVTELGAQAVIYELASVAYMVPFGFGVAASVRVGNALGAGNADQARCSCTTVLL
CAGVCALLVGILLAALKDVVAYIFTNDKDIISLVSQVMPIFAPFHLFDALAGTCGGVLRGTGKQKIGAVL
NTIGYYGFGFPIGVSLMFAAKLGIIGLWAGLIVCVSFQAFSYLIYILRTNWSRVAEQAQVRAGLKSTKEL
IPTPADLPILEREVMDGVILPDIIRPESQTGQLVVEENSQCAVPTVGEVLTGRQLVFYRGMALTVSVAVL
IAGIVVRVFNDRG


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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