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Report for CCDS26018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26018.1 Public Mus musculus 12 Gm4787 23 108 98 CCDS HistoryNCBI Gene:214321Re-query CCDS DB by CCDS ID:26018.1Re-query CCDS DB by GeneID:214321See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062182.7 ENSMUSP00000077390.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062182.7Link to Ensembl Protein Viewer:ENSMUSP00000077390.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062182Re-query CCDS DB by Protein ID:ENSMUSP00000077390
Original member Current member NCBI NM_001038995.2 NP_001034084.2 Accepted alive Link to Nucleotide Sequence:NM_001038995.2Link to Protein Sequence:NP_001034084.2Re-query CCDS DB by Nucleotide ID:NM_001038995Re-query CCDS DB by Protein ID:NP_001034084Link to BLAST:NP_001034084.2

Chromosomal Locations for CCDS 26018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 81377136 81379382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGGCTCCCTTCCTCAGACCACCTACCTGGACTTTGGCCCTCCTGAGAGGTGCTCTCTGGCTCTCTGTGC
TCTGGGCACTGTTGTCTCCTGCCTGCTGTTCCCGTAGCCCACCCAAATGGCGCTTCTCTACCTCTGAAAT
TGTCATCCCCAGGAAGGTTCCCCAGAGAATGGGCAAAAGTGATATGTCAGGGCACATCACCTATAGCATG
CGCTTTAGGGGACAAAGACATGTGGTCCACATGAAACTCAAGAAAAACATGATTCCTCAAAATTTTCCTG
TATATACCTCTAATGACCAAGGAGCCCAGCAGAAGGATTACCCATTTGTTCCTCGGGATTGTTACTTCTA
CAGCTACCTGGAAGGAGTCCCTGGGTCCCAAGCTACACTAGATACCTGCACTGGAGGTCTGAAAGGCATG
ATACAGGTAGATGACTTCACTTATGAAATCAAACCATTGGCATCTTCTTCCAAATTTGAGCATGTAATTT
CTCTGCTTGTGGTGGACGAAAGGTCACGTGAGTCAAAAAAGTGTAGAAATGATGAGATTATGGCAAAGGT
AGGTAACCTCCCTGAAGAGACTAAGCTCGCTGGAAGTCCCAGAGCAGCCCCTGTATATCTGTGGCGTTAC
CATTCGAAAAATGTGGGAATACAATACACGGTGACTCATGAATTATACACACAAATTGGGAGCAATTCAA
CTGCCTCAATTGAGTTAATATTGATTATGACCAGCATTTCACATAGCATTTATAAAACAAGTGGAATGTT
TGTGTTCGCGCGTGCTGCGTGTATTTGGAATGACAAGGACCACTACTCAATTTCCTCATTTTATAACAAT
GTTTGGAGACTTATGGAATTATTTGGCTATTGGAAAGCTGGTTACTTTTGGCATATGGAGCATGCCACTA
CAGCTCTTCTCCTTGGAAGAAAACTTGGAAATACAGATTATGCAGGCTTTCAGGATGGAATATGTAACCC
CAACTGGGGAGTATTATATACATATGTAGGAACAAACCATTTTTTTCTGGCTGGATCTTTCCTGGCACAT
GCAGTGGGTCACCTTCTGAATGTGAGGCATGATACACCGGGTTGTGTTTGTTTCAGAAGGAGCAGTTGTC
TCATGGATGAATTTCCTACTCTTCAGGATATGATTAGCAATTGTTCCCATGATGTGCTACATATGAGGAT
CCATGGTTGGGATCCTTGCATGAGTGAAGTGCGCAGAACACATAATATACAAAACGTTCCTCGTTGTGGA
AATAAGATAGTGGAGGGCAGTGAGAGCTGTGACTGTGGTTCTGTGAAAGACTGTACCACTGATAAGTGTT
GTGAAGTCGATTGTGAGTTTACTCAGGGCAGCTCTTGTAATAAAGGAGGTTGCTGTCTATCTTGTAAGTT
TGCACCCACTGGAACAATATGCAGAGACAAAAATGGTATTTGTGATCTTCCAGAGTACTGTAGTGGAGCC
TCAGAGCATTGCCCAGGAAATTTTTACATCATGGACGGAACTCCTTGTTCTCCACTGGCAGTCTGCATAG
CAGGAAACTGTACTGACCGTCATTTGCAGTGTCAAGCTCTTTTTGGATACCAAGTAAAGGATAGTTCACC
AGCATGCTATCATGAATTAAATGTCAAAGGTGACCGATTTGGAAACTGTGGCGTTAGAATCAAACGAGGA
GGAAGCCAAACTGTCCCATGTCAAAAGGAGGATGTTTTTTGTGGAATGCTCCACTGTGATGGTGTCAAGC
GTATTGTTGGTGGAGGTGAGCACACTACCTTTTATCACCTAAAGGTTCAAGATGTTAAAGAAGTACAGTG
CTTTGGGTATGATATACACCATGGATTAGACCTTCCAGAAATAGGGCTTGTAATGGATGGTGCAACTTGT
GGCCCTGGAAAATACTGTAAAAATCAAAGATGTGTTTTTCATCAAACTTTGAAATTTAATTGCAACATTA
GTTCATGTAACTTCAGAGGGGTGTGTAACAACCAGGGCAACTGTCACTGTGTTCAAGGTTGGCAACCACC
AAAATGTTTACAAAGAGGAAAAGGTGGTAGTGTAAACAGTGGCCCTATAACTAACCCTCTGAAGAGATAT
CGAGCCAAAATACATGTGAGTATCAACAAGCTATTAATTATTTTAGGTGCTCGCATTTTTCTTATCGTGG
CTTTGATTATTTTTGGTGCACTTGCAAAAGCAGTATTACGTCCAGAAGTGCCCCAACGACCCCCAGCAAA
CAGTTAA

Translation (748 aa):
MAPFLRPPTWTLALLRGALWLSVLWALLSPACCSRSPPKWRFSTSEIVIPRKVPQRMGKSDMSGHITYSM
RFRGQRHVVHMKLKKNMIPQNFPVYTSNDQGAQQKDYPFVPRDCYFYSYLEGVPGSQATLDTCTGGLKGM
IQVDDFTYEIKPLASSSKFEHVISLLVVDERSRESKKCRNDEIMAKVGNLPEETKLAGSPRAAPVYLWRY
HSKNVGIQYTVTHELYTQIGSNSTASIELILIMTSISHSIYKTSGMFVFARAACIWNDKDHYSISSFYNN
VWRLMELFGYWKAGYFWHMEHATTALLLGRKLGNTDYAGFQDGICNPNWGVLYTYVGTNHFFLAGSFLAH
AVGHLLNVRHDTPGCVCFRRSSCLMDEFPTLQDMISNCSHDVLHMRIHGWDPCMSEVRRTHNIQNVPRCG
NKIVEGSESCDCGSVKDCTTDKCCEVDCEFTQGSSCNKGGCCLSCKFAPTGTICRDKNGICDLPEYCSGA
SEHCPGNFYIMDGTPCSPLAVCIAGNCTDRHLQCQALFGYQVKDSSPACYHELNVKGDRFGNCGVRIKRG
GSQTVPCQKEDVFCGMLHCDGVKRIVGGGEHTTFYHLKVQDVKEVQCFGYDIHHGLDLPEIGLVMDGATC
GPGKYCKNQRCVFHQTLKFNCNISSCNFRGVCNNQGNCHCVQGWQPPKCLQRGKGGSVNSGPITNPLKRY
RAKIHVSINKLLIILGARIFLIVALIIFGALAKAVLRPEVPQRPPANS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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