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Report for CCDS29214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29214.1 Public Mus musculus 18 Tcerg1 23 108 98 CCDS HistoryNCBI Gene:56070Re-query CCDS DB by CCDS ID:29214.1Re-query CCDS DB by GeneID:56070See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29214.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000237602.1 ENSMUSP00000158288.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237602.1Link to Ensembl Protein Viewer:ENSMUSP00000158288.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237602Re-query CCDS DB by Protein ID:ENSMUSP00000158288
Original member Current member NCBI NM_001039474.1 NP_001034563.1 Accepted alive Link to Nucleotide Sequence:NM_001039474.1Link to Protein Sequence:NP_001034563.1Re-query CCDS DB by Nucleotide ID:NM_001039474Re-query CCDS DB by Protein ID:NP_001034563Link to BLAST:NP_001034563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034563.1 1100 Q8CGF7-1 1100 100% 0 0

Chromosomal Locations for CCDS 29214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 42511527 42511585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42519368 42519593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42522914 42523066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42523893 42524352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42530648 42530890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42535085 42535147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42536178 42536378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42536862 42536974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42537968 42538056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42548397 42548557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42549838 42549894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42550042 42550108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42552492 42552627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42553408 42553497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42560934 42561052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42564083 42564233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42567871 42568035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42568428 42568610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42571015 42571194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42571824 42571907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42573260 42573360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42574518 42574719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3303 nt):
ATGGCGGAGCGTGGCGGGGACGGAGGGGAAGGCGAGCGGTTCAACCCGGGGGAGCTGAGGATGGCTCAAC
AGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCAT
GAGACCACCTCCTCCTTTCGGCATGATGAGAGGCCCTCCTCCACCACCCAGGCCCCCCTTTGGACGGCCT
CCTTTTGATCCTAATATGCCACCAATGCCTCCTCCAGGAGGAATACCTCCACCTATGGGCCCACCTCACC
TACAGAGACCACCTTTCATGCCTCCACCCATGGGAGCTATGCCTCCTCCTCCGGGTATGATGTTCCCACC
AGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCACTGCCTCCCACTGAGGAGATATGGGTAGAAAAT
AAAACTCCAGATGGGAAGGTTTATTACTACAATGCTCGGACTCGTGAATCTGCATGGACCAAGCCAGATG
GAGTTAAGGTTATTCAGCAATCAGAACTGACGCCCATGCTTGCAGCCCAAGCACAGGTTCAGGCCCAGGC
CCAGGCCCAGGCCCAAGCACAGGCTCAGGCCCAGGCCCAGGCACAAGCCCAGGCTCAGGCCCAGGCCCAG
GCCCAGGCTCAGGCACAAGCCCAGGCTCAGGCCCAGGCCCAGGCCCAGGCTCAGGCTCAAGCCCAAGCCC
AAGCGCAAGCACAAGCCCAGGCCCAAGCCCAGGCCCAGGCTCAGGCCCAGGCACAAGTCCAAGCACAAGC
AGTAGGCGCTCCCACCCCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACGTCAACTCCGACATCTACC
CCATCCTCCACCACAGCTACCACGACAACTGCTACTTCAGTTGCACAGACAGTATCAACACCCACAACAC
AAGACCAGACCCCAAGTTCTGCTGTTTCAGTTGCCACACCTACAGTTAGTGTTTCAGCTCCTGCTCCTAC
AGCCACACCTGTGCAAACCGTACCCCAGCCGCACCCACAGACGTTACCTCCTGCTGTTCCTCACTCGGTA
CCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCTCCGTTCCGTGTGCCCCTGCCTG
GCATGCCAATCCCACTTCCAGGTGTAGCAATGATGCAAATAGTCAGCTGCCCGTATGTAAAGACAGTCGC
TACCACCAAGACCGGTGTACTACCAGGAATGGCCCCTCCTATAGTACCCATGATCCATCCCCAGGTTGCT
ATTGCAGCTTCACCTGCTACCCTAGCTGGGGCAACAGCAGTTTCTGAGTGGACTGAATATAAAACAGCAG
ATGGGAAGACGTACTATTATAATAATAGAACACTAGAATCCACGTGGGAGAAGCCCCAAGAACTGAAGGA
GAAAGAAAAATTAGATGAGAAGATTAAAGAACCAATTAAGGAGGCCTCTGAAGAGCCATTGCCAATGGAG
ACTGAGGAGGAAGATCCTAAGGAAGAGCCTGTGAAGGAGATAAAGGAGGAGCCCAAAGAAGAAGAGATGA
CTGAAGAAGAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCTATTCCTGGTACTCCATGGTG
TGTTGTTTGGACTGGTGATGAGAGGGTCTTCTTTTACAATCCCACCACCCGCCTTTCTATGTGGGACCGG
CCTGATGATTTGATTGGAAGGGCGGATGTTGACAAAATTATTCAAGAGCCCCCTCATAAGAAAGGATTGG
AAGACATGAAGAAGCTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCTCAATGAG
CGCAATTAAAGAAGAACAAGAGTTAATGGAAGAAATGAATGAAGATGAGCCTATTAAAGCAAAAAAGCGG
AAGAGAGATGATAATAAAGACATTGATTCAGAGAAAGAAGCTGCCATGGAAGCTGAAATTAAAGCTGCCC
GAGAAAGGGCCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAGAGAGAGGGGT
GTCTGCTTTTTCAACATGGGAGAAAGAGTTGCACAAGATAGTATTTGACCCTCGGTACTTGCTTCTCAAT
CCTAAAGAAAGAAAACAGGTGTTTGATCAGTATGTCAAGACCAGAGCAGAGGAAGAACGCAGGGAAAAGA
AAAACAAAATAATGCAAGCCAAGGAAGATTTCAAAAAAATGATGGAAGAAGCAAAGTTTAATCCAAGAGC
TACTTTTAGTGAATTTGCTGCCAAACATGCTAAAGATTCAAGATTCAAAGCAATTGAAAAGATGAAAGAT
AGAGAAGCATTGTTTAATGAGTTTGTGGCAGCTGCAAGGAAGAAAGAAAAAGAAGATTCGAAGACGAGAG
GGGAGAAGATTAAATCAGATTTCTTTGAACTGTTATCTAATCATCACTTGGATAGTCAATCTCGATGGAG
CAAAGTAAAAGACAAAGTAGAAAGTGACCCCCGATATAAAGCGGTGGATAGTTCATCAATGAGAGAAGAC
CTTTTCAAACAGTACATCGAGAAAATAGCCAAGAATTTAGACTCAGAAAAAGAAAAAGAGCTGGAGAGGC
AAGCCCGCATTGAGGCAAGCCTTCGAGAACGGGAAAGAGAAGTTCAGAAGGCGCGCTCTGAGCAGACGAA
AGAGATCGATCGGGAGAGAGAGCAGCACAAACGGGAGGAGGCTATCCAGAACTTCAAGGCTCTTCTGTCT
GACATGGTACGTTCTTCAGATGTGTCCTGGTCTGATACTAGGAGGACCCTCCGGAAAGACCACCGCTGGG
AATCTGGGTCCTTATTGGAAAGAGAGGAGAAAGAGAAACTTTTTAATGAACATATTGAAGCGCTTACCAA
AAAGAAAAGGGAGCACTTTAGGCAGCTTCTGGACGAAACCTCTGCGATTACCTTAACATCCACGTGGAAA
GAAGTGAAAAAAATAATTAAGGAAGATCCTCGGTGCATTAAGTTCTCCTCCAGTGACAGGAAAAAACAAA
GGGAGTTTGAAGAATACATCAGAGACAAATACATCACTGCCAAAGCTGACTTCAGGACACTTTTGAAAGA
GACCAAATTCATTACATACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACCTGAAAGATGTAGAA
AAGATTTTGCAGAATGACAAACGGTATCTAGTACTGGACTGTGTCCCCGAGGAGAGGAGGAAACTAATTG
TGGCCTATGTTGATGACCTGGATCGCCGAGGTCCACCCCCACCTCCCACAGCATCAGAGCCCACTAGACG
ATCAACAAAATAA

Translation (1100 aa):
MAERGGDGGEGERFNPGELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRP
PFDPNMPPMPPPGGIPPPMGPPHLQRPPFMPPPMGAMPPPPGMMFPPGMPPGTAPGAPALPPTEEIWVEN
KTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQ
AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQVQAQAVGAPTPTTSSPAPAVSTSTPTST
PSSTTATTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPVQTVPQPHPQTLPPAVPHSV
PQPAAAIPAFPPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVA
IAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEPLPME
TEEEDPKEEPVKEIKEEPKEEEMTEEEKAAQKAKPVATTPIPGTPWCVVWTGDERVFFYNPTTRLSMWDR
PDDLIGRADVDKIIQEPPHKKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKR
KRDDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN
PKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKD
REALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMRED
LFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLS
DMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWK
EVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVE
KILQNDKRYLVLDCVPEERRKLIVAYVDDLDRRGPPPPPTASEPTRRSTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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