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Report for CCDS25246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25246.1 Public Mus musculus 11 Nme2 23 108 98 CCDS HistoryNCBI Gene:18103Re-query CCDS DB by CCDS ID:25246.1Re-query CCDS DB by GeneID:18103See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021217.10 ENSMUSP00000021217.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021217.10Link to Ensembl Protein Viewer:ENSMUSP00000021217.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021217Re-query CCDS DB by Protein ID:ENSMUSP00000021217
Original member Current member EBI ENSMUST00000072566.4 ENSMUSP00000103476.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072566.4Link to Ensembl Protein Viewer:ENSMUSP00000103476.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072566Re-query CCDS DB by Protein ID:ENSMUSP00000103476
Original member Current member NCBI NM_001077529.2 NP_001070997.1 Accepted alive Link to Nucleotide Sequence:NM_001077529.2Link to Protein Sequence:NP_001070997.1Re-query CCDS DB by Nucleotide ID:NM_001077529Re-query CCDS DB by Protein ID:NP_001070997Link to BLAST:NP_001070997.1
Original member Current member NCBI NM_008705.5 NP_032731.1 Accepted alive Link to Nucleotide Sequence:NM_008705.5Link to Protein Sequence:NP_032731.1Re-query CCDS DB by Nucleotide ID:NM_008705Re-query CCDS DB by Protein ID:NP_032731Link to BLAST:NP_032731.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070997.1 152 Q01768 152 100% 0 0
NP_032731.1 152 Q01768 152 100% 0 0

Chromosomal Locations for CCDS 25246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93949929 93950046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93951900 93952012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93952800 93952901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93955495 93955620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGGCCAACCTCGAGCGTACCTTCATTGCCATCAAGCCAGATGGCGTGCAGCGCGGCCTGGTGGGCGAGA
TCATCAAACGGTTCGAGCAGAAGGGGTTCCGCCTGGTGGCCATGAAGTTCCTTCGGGCCTCTGAAGAACA
CCTGAAGCAGCATTACATCGACCTGAAAGACCGTCCTTTCTTCCCGGGGCTGGTGAAGTACATGAACTCG
GGGCCCGTGGTGGCCATGGTCTGGGAGGGGCTCAATGTGGTGAAAACGGGCCGAGTGATGCTGGGGGAGA
CCAATCCAGCTGATTCAAAACCAGGCACCATCCGTGGGGATTTCTGCATTCAAGTTGGCAGGAACATCAT
TCATGGCAGTGATTCAGTGGAGAGTGCTGAGAAAGAGATCCATCTGTGGTTTAAGCCCGAAGAACTGATC
GACTACAAGTCTTGTGCCCATGACTGGGTGTACGAGTAG

Translation (152 aa):
MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNS
GPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIHLWFKPEELI
DYKSCAHDWVYE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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