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Report for CCDS40849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40849.1 Public Mus musculus X Ssxb14 23 108 98 CCDS HistoryNCBI Gene:625480Re-query CCDS DB by CCDS ID:40849.1Re-query CCDS DB by GeneID:625480See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 40849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115563.1 ENSMUSP00000111225.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115563.1Link to Ensembl Protein Viewer:ENSMUSP00000111225.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115563Re-query CCDS DB by Protein ID:ENSMUSP00000111225
Original member Current member NCBI NM_001081564.1 NP_001075033.1 Accepted alive Link to Nucleotide Sequence:NM_001081564.1Link to Protein Sequence:NP_001075033.1Re-query CCDS DB by Nucleotide ID:NM_001081564Re-query CCDS DB by Protein ID:NP_001075033Link to BLAST:NP_001075033.1

Chromosomal Locations for CCDS 40849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8843994 8844062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8844517 8844625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8844930 8845019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8845495 8845544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8846143 8846218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8849495 8849607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGAAACAGTGATTTCCTGTGAAAAGATCCCCATGGAAGTACTTCATAAACCAAAGAATATCTGCAAGG
CCTTCCAGGATATTTCTACATACTTCTCTGGTGAAGAGTGGGGAAAGCTGACTGAATGGCAGAAAAGTGC
CTACATGTACATGAAAAGAAACTACACCAGAATGACCGGGGTCACCGTGAACCAACCAGTCTTCATGAGT
GGCAAGGAGCAGGCCAAGCAATCCTTGGTGAAAGGCATTGAAGTTCATGACAGTGAAGATGAATGCTTTG
AAGAATCTTTTGGTGTGACACCAAGAAAACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGT
AGAAGGAAGCCTTGCCTCTGGAGAGAATGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTT
TGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATATATTCAGAGATTAGTGATCCTGAAGAGGAAG
AAGATGATGATTACTGA

Translation (168 aa):
METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMS
GKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNV
WSHRLRERKYRVIYSEISDPEEEEDDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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