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Report for CCDS53054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53054.1 Public Mus musculus X Rhox3c 23 108 98 CCDS HistoryNCBI Gene:100135654Re-query CCDS DB by CCDS ID:53054.1Re-query CCDS DB by GeneID:100135654See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53054.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115188.8 ENSMUSP00000110842.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115188.8Link to Ensembl Protein Viewer:ENSMUSP00000110842.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115188Re-query CCDS DB by Protein ID:ENSMUSP00000110842
Original member Current member EBI ENSMUST00000115189.9 ENSMUSP00000110843.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115189.9Link to Ensembl Protein Viewer:ENSMUSP00000110843.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115189Re-query CCDS DB by Protein ID:ENSMUSP00000110843
Original member Current member NCBI NM_001102457.4 NP_001095927.3 Accepted alive Link to Nucleotide Sequence:NM_001102457.4Link to Protein Sequence:NP_001095927.3Re-query CCDS DB by Nucleotide ID:NM_001102457Re-query CCDS DB by Protein ID:NP_001095927Link to BLAST:NP_001095927.3

Chromosomal Locations for CCDS 53054.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37469868 37470048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37470299 37470668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37472538 37472583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37473729 37473779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGAGCATGAAGCCAGAACGTTCCATCTCTAACTGGATACATAGTAATGTGGAACGGGCTGGAAGAAATC
TCTTCCAGGTCAACGGTCACCGCTCTGCTCTATTACCGGAACTACCTCAGGATTACCACAGAGCTTCAAG
ATCAGTCTACGGATGTGAGACTAAAATGGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCA
AGAAATGAGGAAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAG
AAGCATTAAATGGAGAGAGTCCCGCCGCTGCTGGCACTGCAGGCCTTGTAGAGGAAGACAGGAACAAGGA
AGATGGTGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGGAGCAGATTCCTGAGCATGTTGAA
GGAGAGAGTGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGT
GGCAGCTGGACGAACTGGAGAGAATTTTCCGGATGAATTATTTTCTCAGTCTAGAAGCAAGAAAACAACT
GGCCCGATGGATGGGTGTGAATGAAGCCATAGTGAAGAGATGGTTTCAGAAGAGGAGAGAACAATACAGG
TGGTATAAGAGGCTATAA

Translation (215 aa):
MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEA
RNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVE
GESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYR
WYKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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