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Report for CCDS48720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48720.1 Public Mus musculus 10 Nemp1 23 108 98 CCDS HistoryNCBI Gene:210035Re-query CCDS DB by CCDS ID:48720.1Re-query CCDS DB by GeneID:210035See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048099.4 ENSMUSP00000045988.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048099.4Link to Ensembl Protein Viewer:ENSMUSP00000045988.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000048099Re-query CCDS DB by Protein ID:ENSMUSP00000045988
Original member Current member NCBI NM_001113211.1 NP_001106682.1 Accepted alive Link to Nucleotide Sequence:NM_001113211.1Link to Protein Sequence:NP_001106682.1Re-query CCDS DB by Nucleotide ID:NM_001113211Re-query CCDS DB by Protein ID:NP_001106682Link to BLAST:NP_001106682.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106682.1 437 Q6ZQE4 437 100% 0 0

Chromosomal Locations for CCDS 48720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127677098 127677227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127688233 127688348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127689225 127689444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127690861 127690933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127692968 127693061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127693484 127693598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127694429 127694654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127695369 127695542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127696228 127696393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGCGGGAGGAATCAAAGTGTCGGTGTGGTCGGCGGTTGGTCCAGGGCCCCGGTGCTGGGGGGCCGGGG
GCGGCGGCGGCGCCACATGGCTGCTCTTGGTCGTCGCCGGCTGCGTGGTCTGCGGCTCAGCTGATGTAAA
TGTGGTCATGCTTCAGGAATCCCAAGTTGATATGAATTCCAGTCAACAATTCTGTTATAAAAATGTGCTT
ATCCCAAAGTGGCATGATATATGGACACGGATACAGGTTCGGGTAAATAGTTCCAAGTTGGTCCGAGTTA
CCCAGGTGGACAATGAGGAGAAGCTGAAGGAGCTAGAGCAGTTTAGTATCTGGAACTTTTTTTCTTCTTT
TTTAAAAGAGAAATTGAATGACACCTATGTTAACGTGGGTCTGTACAGCACTAAAACCTGCCTCAAGGTT
GAGATGATAGAGAAGGACACCACGTACAGTGTCACTGTGACCCGGAGATTTGACCCCAAACTCTTCCTTG
TTTTCCTCCTCGGACTGACACTGTTTTTTTGTGGAGACTTGTTGAGCAGGAGTCAAATTTTCTACTATTC
CACTGGGATGAGTGTGGGAATCGTGGCCTCTCTCTTAATCGTCATTTTTATGATCTCTAAGTTTATGCCC
AAGAGAAGCCCCATTTACGTCATCCTGGTAGGAGGCTGGTCCTTCTCTCTGTACCTCATTCAGCTAGTTT
TTAAGAATTTACAGGAGATATGGAGGAGTTACTGGCATTATCTTCTAAGCTACATCCTCACAGTTGGATT
CATGAGTTTTGCAGTGTGCTACAAATATGGGCCCCTGGAAAATGAACGAAGCATTAACCTGCTGACCTGG
ACGCTGCAGCTGCTGGGCCTGGGACTCATGTATTCCAGTATCCAGATCCCGCACGTTGCCTTTGCTCTCA
TCGTCATTGCACTGTGCACTAAGAACCTGGAATACCCTATCCACTGGCTGTGCAGCACCTACAGAAGGAT
GTGTAAGGCATCAGGAAAGCCTGTCCCCCCTCGCCTCCTGACAGAAGAAGAGTATCGGATACAAGGAGAG
GTGGAGACCCAAAAGGCTTTACAGGAACTCCGAGAATTTTGTAACAGTCCGGAGTGCTCTGCCTGGAAGA
CCATATCTCGAATTCAGTCTCCAAAAAGATTTGCTGACTTTGTGGAAGGTTCTTTCCACCTCACGCCAAA
TGAAGTTTCTGTTCACGAACAGGAGTATGGATTAGGGAGCATCTTTACCCAGGATGAGGAGCTGTCCTCA
GAAGAGGAGGGCTCAGAGTACCCCACTTTCACACAGAACAATTTCTTGACTTAA

Translation (437 aa):
MAGGIKVSVWSAVGPGPRCWGAGGGGGATWLLLVVAGCVVCGSADVNVVMLQESQVDMNSSQQFCYKNVL
IPKWHDIWTRIQVRVNSSKLVRVTQVDNEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKV
EMIEKDTTYSVTVTRRFDPKLFLVFLLGLTLFFCGDLLSRSQIFYYSTGMSVGIVASLLIVIFMISKFMP
KRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRSYWHYLLSYILTVGFMSFAVCYKYGPLENERSINLLTW
TLQLLGLGLMYSSIQIPHVAFALIVIALCTKNLEYPIHWLCSTYRRMCKASGKPVPPRLLTEEEYRIQGE
VETQKALQELREFCNSPECSAWKTISRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIFTQDEELSS
EEEGSEYPTFTQNNFLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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