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Report for CCDS52420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52420.1 Public Mus musculus 7 Nps 23 108 98 CCDS HistoryNCBI Gene:100043254Re-query CCDS DB by CCDS ID:52420.1Re-query CCDS DB by GeneID:100043254See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52420.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097983.4 ENSMUSP00000095597.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097983.4Link to Ensembl Protein Viewer:ENSMUSP00000095597.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097983Re-query CCDS DB by Protein ID:ENSMUSP00000095597
Original member Current member NCBI NM_001163611.1 NP_001157083.1 Accepted alive Link to Nucleotide Sequence:NM_001163611.1Link to Protein Sequence:NP_001157083.1Re-query CCDS DB by Nucleotide ID:NM_001163611Re-query CCDS DB by Protein ID:NP_001157083Link to BLAST:NP_001157083.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157083.1 89 P0C0P8 89 100% 0 0

Chromosomal Locations for CCDS 52420.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135268639 135268646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135268759 135268840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135272193 135272372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGATTGGCTCGTTAAAACTCAGCTTCGTCTTAGCTCTGTCGCTGTCTGTAATGCACGTGCTTTGGTGTT
ATCCGGTCCTCTCTTCCAAGGTGCCTGGGAAGCCTGATTACTTTCTCATCTTGCTGAGCAGCTGCCCAGC
CAGGCTGGAGGGGAGCGACAGGCTAGCTTTTCTAAAGCCAATTTTGGAGAAGACATCGATGAAAAGGTCC
TTTCGCAACGGAGTCGGCTCAGGGGCGAAAAAAACTTCGTTTCGAAGAGCAAAGCAATGA

Translation (89 aa):
MIGSLKLSFVLALSLSVMHVLWCYPVLSSKVPGKPDYFLILLSSCPARLEGSDRLAFLKPILEKTSMKRS
FRNGVGSGAKKTSFRRAKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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