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Report for CCDS49510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49510.1 Public Mus musculus 14 Phf11b 23 108 98 CCDS HistoryNCBI Gene:236451Re-query CCDS DB by CCDS ID:49510.1Re-query CCDS DB by GeneID:236451See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166121.3 ENSMUSP00000127857.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166121.3Link to Ensembl Protein Viewer:ENSMUSP00000127857.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166121Re-query CCDS DB by Protein ID:ENSMUSP00000127857
Original member Current member NCBI NM_001164327.1 NP_001157799.1 Accepted alive Link to Nucleotide Sequence:NM_001164327.1Link to Protein Sequence:NP_001157799.1Re-query CCDS DB by Nucleotide ID:NM_001164327Re-query CCDS DB by Protein ID:NP_001157799Link to BLAST:NP_001157799.1

Chromosomal Locations for CCDS 49510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59321281 59321283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59321454 59321620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59323168 59323239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59324866 59324997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59326010 59326059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59328020 59328153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59331190 59331297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59338621 59338742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59341273 59341315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGACCAAGAGAAGCCAGGGTGCTCTAACCCAGTTCCCAATGGTGACTGTCCAATCATAGAAAAGATGG
AAAAAAGGACATGTGCCCTGTGCCCTGAAGGCCATGAGTGGAGTCAAATATACTTTTCACCATCAGGAAA
TATAGTTGCTCATGAAAACTGTTTGCTGTATTCATCAGGACTGGTGGAGAGTGAGGCTCCTGATCTACCT
AATACAATTAGAAACTTTGATGTCAAATCTGTAAAGAAAGAGATCGGGAGAGGAAGAAGATTGAAATGCT
CATTTTGTAAAAACAAAGGAGCCACCATGGGATGTGATTTACAGTCCTGCACCAAGAATTACCACTTATC
CTGTGCCATGGAAGACCACGCAATTCTACAAGTTGATGAAGATCATGGCACTTACAAATTATTTTGTCAA
AAACATGCTCCAGAGGCTCAAGAACCCACACAACGTGATGCAACTGTCAAAGCTCCTTTTCTTAAGAAAT
GCCAGGAAGCAGGACTTCTTAATGTTTTACTTGAATACATACTAGAAAAAATGGATTTGATTCATGGAAG
ACTCCTGGATGAGACTGCCTCAGAGTCAGACTATGAAGGGATCGAGACCTTACTGTTTGAGAGTGGGCTG
TTTGAAGATACATTAATACAATTCCAAGAAGTAATCAAGAGTAAAGCTTGTGAATGGGAAGAAAGGCAAA
GGCTGATGAAGCAGCAGCTTGAGGCACTTGCAGACTTACAACAAAGCTTGTGCTCATATCAAGAAAATGG
GGACCTGGACTGCTCAAGTTCTACATCAGGATCCTTGCTACCTCCTGAGGACCACCAGTAA

Translation (276 aa):
MDQEKPGCSNPVPNGDCPIIEKMEKRTCALCPEGHEWSQIYFSPSGNIVAHENCLLYSSGLVESEAPDLP
NTIRNFDVKSVKKEIGRGRRLKCSFCKNKGATMGCDLQSCTKNYHLSCAMEDHAILQVDEDHGTYKLFCQ
KHAPEAQEPTQRDATVKAPFLKKCQEAGLLNVLLEYILEKMDLIHGRLLDETASESDYEGIETLLFESGL
FEDTLIQFQEVIKSKACEWEERQRLMKQQLEALADLQQSLCSYQENGDLDCSSSTSGSLLPPEDHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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