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Report for CCDS51985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51985.1 Public Mus musculus 7 Vmn1r60 23 108 98 CCDS HistoryNCBI Gene:636697Re-query CCDS DB by CCDS ID:51985.1Re-query CCDS DB by GeneID:636697See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173782.3 ENSMUSP00000133943.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173782.3Link to Ensembl Protein Viewer:ENSMUSP00000133943.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000173782Re-query CCDS DB by Protein ID:ENSMUSP00000133943
Original member Current member NCBI NM_001166732.1 NP_001160204.1 Accepted alive Link to Nucleotide Sequence:NM_001166732.1Link to Protein Sequence:NP_001160204.1Re-query CCDS DB by Nucleotide ID:NM_001166732Re-query CCDS DB by Protein ID:NP_001160204Link to BLAST:NP_001160204.1

Chromosomal Locations for CCDS 51985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 5544197 5545099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGAAATGTTGGCTCTTCAGATCCTTTTGCTTTGCCATGTTGTGGTTGGGACTGTGGGCAACATCCTTC
TGTTTGTCCATAACTTCTCTCCAATCTTGACAGACTCCAGACTGAGGCCCATACAGGTCATTCTAATCAA
CTTGGCTGTGGCCAATGCATTCATGCTCCTTCTGTTTGCATATTCATATGACCTTATTGATATTGTTCCC
AGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTCACCTAGTTGCTCGAGGCACAATCA
TGTGCTCCACCTGTGTCCTCAGCACCTACCAGTTTGTCACTCTTGTTCCTGGTACCTGGGCTAGGGTCAT
GTTCAGCGAAATATCCCCCAAGGTTGTGAGCTATTGTTGTTACAGCTGCTGGTTGTTCAGTGTCTTAAAT
AATGCTTACATGCCAATGTATGTCAGTGGTCCACAGAAAACACACAATGACTCTGATTCTAAAGGCAATT
CGATATGCTCCATCTCTGGGGTCAGTGTGGACATGAATGTCTTGCGGTTTTCCCATGACATCATATTCCT
TAATATCATGGCCTGGACCAGTGTCTCCATGGTGATTCACCTAAACAGACACCACCAGAGAATGAACCAC
ATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAGCCCACACCATCCTGATGCTGG
TGGTCACATTTGTGAGCTTATATATTCTAAATTGTATTAGTATTTTACTTCACTTTTCCTTTGTGGAATT
TCGTCTCTGGATGAGGTATGTCACAAATCTCCTGTCTCTAAGCTTCCCCACCATTTCTCCCTTACTGTTG
ATATTTAGGGATTGTAAGGGTCATTGTTCTGTGCACATCATGTCAGTATGGAAATCCATGTGA

Translation (300 aa):
MEMLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDIVP
RKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLN
NAYMPMYVSGPQKTHNDSDSKGNSICSISGVSVDMNVLRFSHDIIFLNIMAWTSVSMVIHLNRHHQRMNH
IHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILLHFSFVEFRLWMRYVTNLLSLSFPTISPLLL
IFRDCKGHCSVHIMSVWKSM


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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