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Report for CCDS70651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70651.1 Public Mus musculus 15 Nfam1 23 108 98 CCDS HistoryNCBI Gene:74039Re-query CCDS DB by CCDS ID:70651.1Re-query CCDS DB by GeneID:74039See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70651.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023076.5 ENSMUSP00000023076.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023076.5Link to Ensembl Protein Viewer:ENSMUSP00000023076.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023076Re-query CCDS DB by Protein ID:ENSMUSP00000023076
Original member Current member NCBI NM_001271413.1 NP_001258342.1 Accepted alive Link to Nucleotide Sequence:NM_001271413.1Link to Protein Sequence:NP_001258342.1Re-query CCDS DB by Nucleotide ID:NM_001271413Re-query CCDS DB by Protein ID:NP_001258342Link to BLAST:NP_001258342.1
Original member Current member NCBI NM_001271414.1 NP_001258343.1 Accepted alive Link to Nucleotide Sequence:NM_001271414.1Link to Protein Sequence:NP_001258343.1Re-query CCDS DB by Nucleotide ID:NM_001271414Re-query CCDS DB by Protein ID:NP_001258343Link to BLAST:NP_001258343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258342.1 213 Q8R4V1-3 213 100% 0 0
NP_001258343.1 213 Q8R4V1-3 213 100% 0 0

Chromosomal Locations for CCDS 70651.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82999736 82999795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83001415 83001501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83010375 83010473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83014915 83015027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83016344 83016626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGTGTCCCTGGCAAACACCGATGTGTTCTTCAGCTGCAGAATCGAGGACTTCACAAGACTTCAAAGAG
ATTTGCCTGTTAAGTTGTTTCATACGGATATCCATGGCCGGAGACGCTGGGAGAAGCAGATTAACTGCCA
ACACAGACCTGGCATGGAGAACCATACCAGGGATTGCATGGTTAAACTCAGCCAGGCAAACACATCAGCC
ACAGGCATTTACTACTTCATAGTCGAAGGAGAGGAAACATATCAGAGCGATGGCGTTGTCATTCTGGTCA
GAGACACAGTGTACCAGCCACCTGCATTCAAGGTCCAGGAGGCTCTGATGCTTGGCTTTACCAGCCTGAT
GAGCGTCCTGGGTGTGCTGGGCACAGCGCTACTGCTTTGGAAGAAGAAACAGATATCAGTTCTGGGCAAG
CACACTGCTAAGACTTGTTCTGGTCTCAAATCCACCGTCGGAACCACAAAGCCTCCAGCAGAATCTGTCT
ACACGTCCCTACAGCGTCGAGAGACGGAGGTCTACGCCTGTATGAAGGAAGAGACTGGAAGCCCTGTCTT
CAGCCAAAGCCCAGCCACCAAGGAGAAGCTGAATAGATTTGAGGATGACAACGAATTTAACCTTGTCTAT
GAAAATCTCTAG

Translation (213 aa):
MVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSA
TGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGK
HTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVY
ENL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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