NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37647.1 Public Mus musculus 17 Oard1 23 108 98 CCDS HistoryNCBI Gene:106821Re-query CCDS DB by CCDS ID:37647.1Re-query CCDS DB by GeneID:106821See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046651.6 ENSMUSP00000039280.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046651.6Link to Ensembl Protein Viewer:ENSMUSP00000039280.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046651Re-query CCDS DB by Protein ID:ENSMUSP00000039280
Original member Current member EBI ENSMUST00000167180.7 ENSMUSP00000130802.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167180.7Link to Ensembl Protein Viewer:ENSMUSP00000130802.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167180Re-query CCDS DB by Protein ID:ENSMUSP00000130802
Original member Current member NCBI NM_001289490.1 NP_001276419.1 Accepted alive Link to Nucleotide Sequence:NM_001289490.1Link to Protein Sequence:NP_001276419.1Re-query CCDS DB by Nucleotide ID:NM_001289490Re-query CCDS DB by Protein ID:NP_001276419Link to BLAST:NP_001276419.1
Original member Current member NCBI NM_001289491.1 NP_001276420.1 Accepted alive Link to Nucleotide Sequence:NM_001289491.1Link to Protein Sequence:NP_001276420.1Re-query CCDS DB by Nucleotide ID:NM_001289491Re-query CCDS DB by Protein ID:NP_001276420Link to BLAST:NP_001276420.1
Original member Current member NCBI NM_001357903.1 NP_001344832.1 Accepted alive Link to Nucleotide Sequence:NM_001357903.1Link to Protein Sequence:NP_001344832.1Re-query CCDS DB by Nucleotide ID:NM_001357903Re-query CCDS DB by Protein ID:NP_001344832Link to BLAST:NP_001344832.1
Original member Current member NCBI NM_001357904.1 NP_001344833.1 Accepted alive Link to Nucleotide Sequence:NM_001357904.1Link to Protein Sequence:NP_001344833.1Re-query CCDS DB by Nucleotide ID:NM_001357904Re-query CCDS DB by Protein ID:NP_001344833Link to BLAST:NP_001344833.1
Original member Current member NCBI NM_207219.4 NP_997102.2 Accepted alive Link to Nucleotide Sequence:NM_207219.4Link to Protein Sequence:NP_997102.2Re-query CCDS DB by Nucleotide ID:NM_207219Re-query CCDS DB by Protein ID:NP_997102Link to BLAST:NP_997102.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276419.1 152 Q8R5F3 152 100% 0 0
NP_001276420.1 152 Q8R5F3 152 100% 0 0
NP_001344832.1 152 Q8R5F3 152 100% 0 0
NP_001344833.1 152 Q8R5F3 152 100% 0 0
NP_997102.2 152 Q8R5F3 152 100% 0 0

Chromosomal Locations for CCDS 37647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48410866 48410904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48411264 48411408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48414226 48414284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48415221 48415333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48416684 48416786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGGCCACCCGCCTTAATGAAGATCCAGAAGGAAGTCGAATCACTTACGTGAAAGGAGATCTTTTCGCAT
GTCCCAAAACAGACTCTCTAGCCCATTGTATCAGTGAGGATTGTCGAATGGGTGCTGGAATAGCTGTTCT
CTTCAAGAAGAGATTCGGAGGGGTGCAGGAACTGTTAAGTCAACAAAAGAAGTCTGGAGAAGTGGCTGTT
CTGAAGAGAGATGGGCGATATATATATTACTTGATTACAAAGAAACGGGCTTCACACAAGCCAACGTATG
AGAACCTACAGAAGAGTTTGGAGGCCATGAAGTCCCATTGTTTGAAGAATGGCGTCACTGACCTCTCCAT
GCCCAGGATTGGATGTGGTCTGGATCGGCTGCAGTGGGAAAATGTATCTGCGATTCTCGAAGAGGTGTTT
GAGTCAACAGACATCAAAATTACTGTGTACACACTCTGA

Translation (152 aa):
MATRLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKRFGGVQELLSQQKKSGEVAV
LKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAILEEVF
ESTDIKITVYTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH