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Report for CCDS80325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80325.1 Public Mus musculus 5 Rufy3 23 108 98 CCDS HistoryNCBI Gene:52822Re-query CCDS DB by CCDS ID:80325.1Re-query CCDS DB by GeneID:52822See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80325.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199312.4 ENSMUSP00000143115.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199312.4Link to Ensembl Protein Viewer:ENSMUSP00000143115.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199312Re-query CCDS DB by Protein ID:ENSMUSP00000143115
Original member Current member EBI ENSMUST00000196686.1 ENSMUSP00000143209.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196686.1Link to Ensembl Protein Viewer:ENSMUSP00000143209.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196686Re-query CCDS DB by Protein ID:ENSMUSP00000143209
Original member NCBI NM_001289776.1 NP_001276705.1 Updated not alive Link to Nucleotide Sequence:NM_001289776.1Link to Protein Sequence:NP_001276705.1Re-query CCDS DB by Nucleotide ID:NM_001289776Re-query CCDS DB by Protein ID:NP_001276705
Current member NCBI NM_001289776.2 NP_001276705.1 Accepted alive Link to Nucleotide Sequence:NM_001289776.2Link to Protein Sequence:NP_001276705.1Re-query CCDS DB by Nucleotide ID:NM_001289776Re-query CCDS DB by Protein ID:NP_001276705Link to BLAST:NP_001276705.1
Original member NCBI NM_001289777.1 NP_001276706.1 Updated not alive Link to Nucleotide Sequence:NM_001289777.1Link to Protein Sequence:NP_001276706.1Re-query CCDS DB by Nucleotide ID:NM_001289777Re-query CCDS DB by Protein ID:NP_001276706
Current member NCBI NM_001289777.2 NP_001276706.1 Accepted alive Link to Nucleotide Sequence:NM_001289777.2Link to Protein Sequence:NP_001276706.1Re-query CCDS DB by Nucleotide ID:NM_001289777Re-query CCDS DB by Protein ID:NP_001276706Link to BLAST:NP_001276706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276705.1 487 Q9D394-3 487 100% 0 0
NP_001276706.1 487 Q9D394-3 487 100% 0 0

Chromosomal Locations for CCDS 80325.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88584140 88584317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88598436 88598489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88614941 88615114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88616462 88616579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88617335 88617436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88621301 88621424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88627221 88627282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88628025 88628090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88630537 88630606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88632439 88632531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88635192 88635275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88637192 88637359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88638981 88639078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88640589 88640661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGTCTGCCCTGACGCCTCCGACTGATATGCCAACCCCCACCACTGACAAGATCACACAGGCTGCCATGG
AGACCATCTACCTTTGCAAATTCCGAGTGTCTATGGACGGAGAATGGCTCTGCCTTCGGGAGCTGGATGA
CATCTCCCTTACACCCGACCCAGAGCCGACCCATGAAGACTCTTGGGAGGATTTGACAGATTTGGTGGAG
CAAGTGCGTGCTGACCCAGAAGATCCCAATTATCTCATGGCTAACGAACGCATGAACCTGATGAACATGG
CAAAGCTGAGCATCAAGGGCTTGATTGAATCGGCTCTGAATCTGGGGCGGACCCTGGACTCTGACTACGC
ACCTCTCCAGCAGTTTTTCGTGGTGATGGAACACTGCCTGAAACACGGCTTGAAAGCCAAGAAAACTTTT
CTTGGACAAAATAAATCCTTCTGGGGGCCTCTAGAGCTGGTGGAGAAGCTTGTTCCAGAAGCTGCAGAAA
TAACAGCGAGTGTAAAAGACCTCCCAGGACTCAAGACACCAGTTGGCAGAGGAAGAGCCTGGCTTCGGTT
GGCATTGATGCAAAAGAAGCTTTCTGAGTATATGAAAGCCTTGATCAATAAGAAGGAACTTCTCAGTGAG
TTCTATGAAGTCAATGCCCTCATGATGGAAGAAGAAGGAGCTATTATCGCTGGTCTCCTGGTGGGTCTGA
ATGTCATCGATGCCAATTTCTGCATGAAAGGAGAAGACCTGGACTCTCAGGTTGGAGTTATAGATTTTTC
GATGTATCTCAAAGATGGAAACAGTAGTAAAGGTAGTGAAGGGGATGGACAGATTACTGCGATCCTAGAC
CAGAAGAACTATGTAGAAGAACTCAACAGACATCTGAATGCAACTGTAAACAACCTTCAGACAAAAGTAG
ATCTGTTAGAAAAATCCAACACTAAATTGACAGAAGAACTTGCCGTTGCCAACAACAGAATTATTACCTT
ACAAGAAGAAATGGAACGAGTTAAAGAAGAAAGCTCCTATCTACTGGAATCCAATCGGAAGGGTCCTAAA
CAAGACAGAACTGCAGAAGGGCAAGCGCTGAGCGAAGCCAGAAAGCATCTAAAGGAGGAGACACAGTTAA
GATTGGATGTCGAGAAGGAGCTGGAGCTGCAGATCAGCATGAGGCAGGAGATGGAACTGGCTATGAAGAT
GCTGGAGAAGGATGTCTGTGAGAAGCAGGATGCCCTGGTGTCTCTGCGGCAGCAGCTGGACGATCTCCGG
GCTCTTAAGCATGAGCTCGCCTTTAAACTGCAGAGTTCAGACCTAGGAGTGAAACAGAAAAGTGAATTAA
ACAGTCGCTTGGAAGAAAAGACCAATCAGATGGCTGCCACCATTAAACAGCTGGAGCAAAGTGAAAAAGA
TTTGGTGAAACAGGCAAAGACCTTAAATAGTGCAGCAAATAAACTGATCCCAAAGCACCATTAA

Translation (487 aa):
MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHEDSWEDLTDLVE
QVRADPEDPNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTF
LGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSE
FYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGSEGDGQITAILD
QKNYVEELNRHLNATVNNLQTKVDLLEKSNTKLTEELAVANNRIITLQEEMERVKEESSYLLESNRKGPK
QDRTAEGQALSEARKHLKEETQLRLDVEKELELQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLR
ALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDLVKQAKTLNSAANKLIPKHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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