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Report for CCDS28652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28652.1 Public Mus musculus 17 Ppt2 23 108 98 CCDS HistoryNCBI Gene:54397Re-query CCDS DB by CCDS ID:28652.1Re-query CCDS DB by GeneID:54397See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064953.14 ENSMUSP00000068071.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064953.14Link to Ensembl Protein Viewer:ENSMUSP00000068071.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000064953Re-query CCDS DB by Protein ID:ENSMUSP00000068071
Original member Current member EBI ENSMUST00000169067.8 ENSMUSP00000127372.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169067.8Link to Ensembl Protein Viewer:ENSMUSP00000127372.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169067Re-query CCDS DB by Protein ID:ENSMUSP00000127372
Original member Current member EBI ENSMUST00000171121.8 ENSMUSP00000127745.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171121.8Link to Ensembl Protein Viewer:ENSMUSP00000127745.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171121Re-query CCDS DB by Protein ID:ENSMUSP00000127745
Original member Current member EBI ENSMUST00000171376.7 ENSMUSP00000131243.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171376.7Link to Ensembl Protein Viewer:ENSMUSP00000131243.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171376Re-query CCDS DB by Protein ID:ENSMUSP00000131243
Original member Current member EBI ENSMUST00000166040.8 ENSMUSP00000132006.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166040.8Link to Ensembl Protein Viewer:ENSMUSP00000132006.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166040Re-query CCDS DB by Protein ID:ENSMUSP00000132006
Original member Current member EBI ENSMUST00000168391.8 ENSMUSP00000132339.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168391.8Link to Ensembl Protein Viewer:ENSMUSP00000132339.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168391Re-query CCDS DB by Protein ID:ENSMUSP00000132339
Original member Current member NCBI NM_001302393.1 NP_001289322.1 Accepted alive Link to Nucleotide Sequence:NM_001302393.1Link to Protein Sequence:NP_001289322.1Re-query CCDS DB by Nucleotide ID:NM_001302393Re-query CCDS DB by Protein ID:NP_001289322Link to BLAST:NP_001289322.1
Original member Current member NCBI NM_001302394.1 NP_001289323.1 Accepted alive Link to Nucleotide Sequence:NM_001302394.1Link to Protein Sequence:NP_001289323.1Re-query CCDS DB by Nucleotide ID:NM_001302394Re-query CCDS DB by Protein ID:NP_001289323Link to BLAST:NP_001289323.1
Original member Current member NCBI NM_001302395.1 NP_001289324.1 Accepted alive Link to Nucleotide Sequence:NM_001302395.1Link to Protein Sequence:NP_001289324.1Re-query CCDS DB by Nucleotide ID:NM_001302395Re-query CCDS DB by Protein ID:NP_001289324Link to BLAST:NP_001289324.1
Original member Current member NCBI NM_001302396.1 NP_001289325.1 Accepted alive Link to Nucleotide Sequence:NM_001302396.1Link to Protein Sequence:NP_001289325.1Re-query CCDS DB by Nucleotide ID:NM_001302396Re-query CCDS DB by Protein ID:NP_001289325Link to BLAST:NP_001289325.1
Original member Current member NCBI NM_019441.5 NP_062314.1 Accepted alive Link to Nucleotide Sequence:NM_019441.5Link to Protein Sequence:NP_062314.1Re-query CCDS DB by Nucleotide ID:NM_019441Re-query CCDS DB by Protein ID:NP_062314Link to BLAST:NP_062314.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289322.1 302 O35448 302 100% 0 0
NP_001289323.1 302 O35448 302 100% 0 0
NP_001289324.1 302 O35448 302 100% 0 0
NP_001289325.1 302 O35448 302 100% 0 0
NP_062314.1 302 O35448 302 100% 0 0

Chromosomal Locations for CCDS 28652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34617344 34617487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34617664 34617718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34622851 34622935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34623031 34623114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34625637 34625744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34625836 34625931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34626459 34626612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34626805 34626987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGCCGGGGCTATGGAGGCAGAGGCTTCCTTCGGCTTGGGCTTTGCTTCTCCTGCCGTTCCTGCCGCTGC
TGATGCCCGCAGCCCCCGCAGCCCACCGCGGGTCCTACAAGCCCGTGATCGTGGTGCACGGGCTCTTTGA
CAGTTCATACAGCTTCCGCCACCTGCTGGACTATATCAATGAGACACACACCGGGACTGTGGTGACAGTG
CTTGATCTCTTCGATGGCAGAGAGAGTTTGCGGCCCCTGTGGGAACAGGTACAAGGGTTCCGAGAGGCTG
TGGTCCCCATCATGGAAAAGGCCCCTGAAGGAGTGCACCTCATCTGCTACTCCCAGGGGGGCCTGGTGTG
CCGTGCTTTGCTGTCTGTCATGGATAACCACAATGTGGACTCTTTCATCTCCCTCTCCTCCCCACAGATG
GGCCAGTATGGAGACACGGACTATTTGAAATGGCTCTTCCCCACGTCCATGCGGTCTAACCTCTATCGGG
TCTGCTATAGTCCTTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACGATCCTCACCACGATGACTT
GTACCTCAATGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAAAGAGACCATCCCAATGCCACTGCATGG
CGGAAGAACTTCCTTCGCGTGGGCCGTCTGGTGCTGATTGGGGGTCCTGATGATGGCGTTATCACTCCCT
GGCAATCTAGCTTCTTTGGTTTCTATGATGCCAATGAGACAGTTCTGGAGATGGAGGAGCAGCCGGTGTA
TCTTCGAGATTCTTTTGGGTTGAAGACTCTCCTGGCCCGGGGGGCCATAGTGAGGTGTCCCATGGCTGGC
ATCTCTCACACCACGTGGCACTCTAACCGTACGCTCTACGATACTTGCATTGAGCCGTGGCTCTCCTGA

Translation (302 aa):
MPGLWRQRLPSAWALLLLPFLPLLMPAAPAAHRGSYKPVIVVHGLFDSSYSFRHLLDYINETHTGTVVTV
LDLFDGRESLRPLWEQVQGFREAVVPIMEKAPEGVHLICYSQGGLVCRALLSVMDNHNVDSFISLSSPQM
GQYGDTDYLKWLFPTSMRSNLYRVCYSPWGQEFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATAW
RKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQPVYLRDSFGLKTLLARGAIVRCPMAG
ISHTTWHSNRTLYDTCIEPWLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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