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Report for CCDS79411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79411.1 Public Mus musculus 15 Pou6f1 23 108 98 CCDS HistoryNCBI Gene:19009Re-query CCDS DB by CCDS ID:79411.1Re-query CCDS DB by GeneID:19009See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073837.12 ENSMUSP00000073504.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073837.12Link to Ensembl Protein Viewer:ENSMUSP00000073504.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073837Re-query CCDS DB by Protein ID:ENSMUSP00000073504
Original member NCBI NM_001304965.1 NP_001291894.1 Updated not alive Link to Nucleotide Sequence:NM_001304965.1Link to Protein Sequence:NP_001291894.1Re-query CCDS DB by Nucleotide ID:NM_001304965Re-query CCDS DB by Protein ID:NP_001291894
Current member NCBI NM_001304965.2 NP_001291894.1 Accepted alive Link to Nucleotide Sequence:NM_001304965.2Link to Protein Sequence:NP_001291894.1Re-query CCDS DB by Nucleotide ID:NM_001304965Re-query CCDS DB by Protein ID:NP_001291894Link to BLAST:NP_001291894.1

Chromosomal Locations for CCDS 79411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 100578273 100578618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100579876 100580044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100580810 100580951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100583228 100583431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100584031 100584159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100585875 100586128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100586644 100586772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100587789 100587905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100591841 100592033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100593973 100594020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGGATCCCGGAGCTGGATCGGACTCATCTCTGACTGTCAATGAGCAGGTCATTGTGATGTCAGGCCACG
AGACCATCCGAGTATTGGAGGTGGGAGTGGATGCCCAGCTTCCAGCCGAGGAGGAGAGCAAAGGACTGGA
GAGTGTGGCAGCTGGTGGCTCCCAGAGTGGAGGCCCTGTTGAAGCCAGTGGACCTGCTGAAGCTGGGTCA
TGTGACCCCGACCATTCTGCAGAGGCAACTGTCGCTGCCCGGAGTCCCTCCGAGTCCTGCCCCAGCGATT
GCCACCTTCAACCAAGCCCCGAGCCAGCCTCAGGCATCACAGACCCTGACGCCGCTGGCTGTACAAGCTG
CCCCCCAGGTCAAGTGGCTGGGCAGCAGGGGCTGGCCGTGTGGACAATCCCTACAGCAACTGTGGCTGCC
CTCCCAGGACTGACCGCGGCCTCTCCCACGGGGGGAACTTTCAAGCCACCTTTAGCTGGTCTCCAAGCAG
CTGCCGTGCTGAACACCGCTCTCCCGACACCTGTACAAGCTGCCCCACCAATCCAGGCCTCCTCGCCCGC
CCAGCCCCGGCCACCAGCTCAGCCCCAGCCACTGTTCCAGACCCAGCCGCTGCTACAGACCACGCCTGCC
ATCCTCCCACAACCCACCGCTGCCACCGTTGCTGCCCCCACACCCAAGACAGTGGACGCCACCCCGCAGA
TCACTGTCCAGCCTGCAGGCTTCGCATTTAGCCCAGGGATCATCAGTGCAGCCTCCCTCGGGGGACAGAC
GCAGATCCTGGGCTCCCTCACTACAGCTCCAGTTATTACCAACACCATTCCCAGCATGCCCGGGATCAGC
AGTCAGATCCTCACGAATGCTCAGGGACAGGTTATTGGAGCACTTCCGTGGGTAGTGAACTCAGCTAGCG
TGGCCACACCAGCACCGGCACAGAGCCTGCAGGTCCAAGCCGTGACTCCCCAGCTCTTGTTGAATGCCCA
GGGCCAGGTGATCGCAACCCTAGCCAGCAGCCCCCTGCCTCAGCCTGTGGCTGTCAGGAAGCCAAACACA
CCGGAGTCCCCTGCTAAGAGTGAGGTGCAGCCTATCCAGCCGACACAAGCCGTGCCCCAGCCTGCAGTAA
TCCTCACCAGCCCAACGCCAGCGCTCAAGCCGTCAGCTGCAACTCCCATCCCAATCACCTGCTCAGAGAC
CCCAACCGTCAGTCAGTTGGTATCAAAGCCGCACACCCCAAGTCTGGATGAGGACGGGATCAACTTAGAA
GAGATCCGGGAGTTTGCTAAGAATTTTAAGATCCGGCGGCTCTCCCTGGGTCTGACACAGACCCAGGTGG
GCCAGGCTTTGACGGCGACAGAAGGGCCGGCCTACAGCCAATCAGCCATCTGCAGGTTTGAGAAATTGGA
CATCACACCCAAGAGCGCCCAGAAGCTGAAGCCGGTTTTGGAAAAGTGGTTGATGGAGGCAGAGCTCCGC
AACCAGGAAGGCCAGCAGAACCTGATGGAGTTCGTGGGCGGCGAGCCCTCCAAGAAACGCAAGCGGCGCA
CTTCCTTCACACCGCAGGCCATAGAGGCTCTCAATGCCTACTTTGAGAAAAACCCCCTGCCCACCGGCCA
GGAGATCACGGAGATCGCCAAGGAGCTCAACTACGACCGGGAGGTGGTGAGGGTCTGGTTCTGTAATCGA
CGCCAGACACTGAAGAACACCAGCAAGCTGAACGTCTTTCAGATCCCGTAG

Translation (576 aa):
MDPGAGSDSSLTVNEQVIVMSGHETIRVLEVGVDAQLPAEEESKGLESVAAGGSQSGGPVEASGPAEAGS
CDPDHSAEATVAARSPSESCPSDCHLQPSPEPASGITDPDAAGCTSCPPGQVAGQQGLAVWTIPTATVAA
LPGLTAASPTGGTFKPPLAGLQAAAVLNTALPTPVQAAPPIQASSPAQPRPPAQPQPLFQTQPLLQTTPA
ILPQPTAATVAAPTPKTVDATPQITVQPAGFAFSPGIISAASLGGQTQILGSLTTAPVITNTIPSMPGIS
SQILTNAQGQVIGALPWVVNSASVATPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPLPQPVAVRKPNT
PESPAKSEVQPIQPTQAVPQPAVILTSPTPALKPSAATPIPITCSETPTVSQLVSKPHTPSLDEDGINLE
EIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLMEAELR
NQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNR
RQTLKNTSKLNVFQIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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