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Report for CCDS89380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89380.1 Public Mus musculus 19 Lipo1 23 108 98 CCDS HistoryNCBI Gene:329055Re-query CCDS DB by CCDS ID:89380.1Re-query CCDS DB by GeneID:329055See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 89380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148137.8 ENSMUSP00000118385.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148137.8Link to Ensembl Protein Viewer:ENSMUSP00000118385.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000148137Re-query CCDS DB by Protein ID:ENSMUSP00000118385
Original member Current member NCBI NM_001323065.1 NP_001309994.1 Accepted alive Link to Nucleotide Sequence:NM_001323065.1Link to Protein Sequence:NP_001309994.1Re-query CCDS DB by Nucleotide ID:NM_001323065Re-query CCDS DB by Protein ID:NP_001309994Link to BLAST:NP_001309994.1

Chromosomal Locations for CCDS 89380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 33776534 33776782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33777422 33777493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33778970 33779041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33780261 33780404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33782172 33782308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33783455 33783564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33784680 33784878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33785625 33785742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33787354 33787452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGCTGTGGCTGCTGAGAACAATGTGCCTTATCCATGTACTTGGAAAAATATTTTGTTTAATTGGACCAA
ACAAGAATCCTGAATCTAACATGAATGTTAGTCAGATTATTAAACACTGGGAATATCCAAGTGAAGAATA
TGAGGTTGTGACTGATGATGGTTACATTCTTCCAATTAACCGAATTCCTCATGGGAAGAACAATGCTAAT
AGTTCAGCCCCAAAGATGGTAGTATTTTGTCTCCCTGGCTTGTTTTCAACTGCTGGTGTATGGGTTTCCA
ATCCCCCTGACAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGTTGGGAAACAACAG
AGGAAGTACCTGGGCAAAGAAACACGTGACCCTCAACCCAGATTCTAAAGAATTCTGGGCTTTTAGTTAT
GATGAGATGATAAAATATGACCTTCCAGCCATCATTAATTTCATTCTGGAGAAAACAGGACAAAAGCAAA
TTTACTATGCTGGCCATTCTCAAGGAACCCTAATCGCTCTGGGGGCATTTGCAACAAATCAAGAACTGGC
TGAAAAGATTAAACTCAGCATTTTAATAGCTCCAATTCATACTGTTAAATATGTCAAAGGTTCTGGGCGC
CTTCCAGCTTATTTTACTCCAACGGCTTTCAAGATTGTTTTTGGTGAAAAAGAATTCTTCCCTACCAAAG
TTTTCAGTAGGCTGTCTCAACATGTGTGCGATATTAAGTTGGTTGATGCTGGATGCGCTACTGTACTGGG
CTCACTGACTGGATATTCTCCAGAGCAATTAAATACGAGCCGTGTTGATGTGTACATAACACACAGTCTA
GCTGAATCATCAGTTCAAATTCTTATACATTATGGTCAGGCAATTAGAAGTGGTGTATTTCAGGCTTATG
ATTGGGGAAGTCCATCTCTGAATATGCAGCACTACAATCAGACTACTCCTCCTGTATACAATGTGGAAGA
CATGAAGGTTCCAACTGCCATGTTTAGTGGTTTAAAAGATTTTTTGTCTAACCCAGAAGATGTTGCAAAT
TTGGTACCCAAAATCTCCAACCTCACATACCATAAGATTATTTCTGATTTTAGTCATCTTGATTTTATAA
CAGGATTAAATGCTAGGGAAGAGGTTTCTGAGGAAATTTTAACAATTCTTAGAAAATATGATGGTGACAT
ACAGATTTAG

Translation (399 aa):
MLWLLRTMCLIHVLGKIFCLIGPNKNPESNMNVSQIIKHWEYPSEEYEVVTDDGYILPINRIPHGKNNAN
SSAPKMVVFCLPGLFSTAGVWVSNPPDNSLAFILADAGYDVWLGNNRGSTWAKKHVTLNPDSKEFWAFSY
DEMIKYDLPAIINFILEKTGQKQIYYAGHSQGTLIALGAFATNQELAEKIKLSILIAPIHTVKYVKGSGR
LPAYFTPTAFKIVFGEKEFFPTKVFSRLSQHVCDIKLVDAGCATVLGSLTGYSPEQLNTSRVDVYITHSL
AESSVQILIHYGQAIRSGVFQAYDWGSPSLNMQHYNQTTPPVYNVEDMKVPTAMFSGLKDFLSNPEDVAN
LVPKISNLTYHKIISDFSHLDFITGLNAREEVSEEILTILRKYDGDIQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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