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Report for CCDS84408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84408.1 Public Mus musculus 19 Peli3 23 108 98 CCDS HistoryNCBI Gene:240518Re-query CCDS DB by CCDS ID:84408.1Re-query CCDS DB by GeneID:240518See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120475.7 ENSMUSP00000113193.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120475.7Link to Ensembl Protein Viewer:ENSMUSP00000113193.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120475Re-query CCDS DB by Protein ID:ENSMUSP00000113193
Original member Current member NCBI NM_001347422.1 NP_001334351.1 Accepted alive Link to Nucleotide Sequence:NM_001347422.1Link to Protein Sequence:NP_001334351.1Re-query CCDS DB by Nucleotide ID:NM_001347422Re-query CCDS DB by Protein ID:NP_001334351Link to BLAST:NP_001334351.1

Chromosomal Locations for CCDS 84408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4932298 4932867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4934367 4934555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4934903 4935097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4938049 4938178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4941760 4941911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGTGCTGGAAGGAAACCCTGACGTGGGATCCCCCCGGACCTCAGACCTCCAGCACCCGGGGAGCCAGG
GCTCTTGCATCCTGTCTTGTCCTGGTGAAGAAGCACTGGCAGGCGAGGAGCCCATCAAGTATGGTGAACT
CATCGTTCTGGGCTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTG
AGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCA
AGATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTAC
AGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCC
TATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGAGAGCGGGCAGCCA
AATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGG
TGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTG
CGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGGTGGAAAACGAATCCAACGTCCTGCAAGACGGTT
CGCTCATCGACCTGTGTGGGGCCACACTGTTGTGGCGCACTCCGGCTGGGTTGCTGAGGGCACCCACACT
GAAACAACTAGAGGCCCAGCGACAGGAGGCCAACGCAGCACGGCCCCAGTGCCCCGTGGGCCTTAGCACC
TTGGCCTTCCCCAGCCCAGCCCGTGGCCGCACAGCACCCGACAAACAGCAACCCTGGGTCTACGTCCGTT
GTGGTCATGTCCATGGCTATCACGGCTGGGGCTGCCGGAGGGAACAAGGCCCCCAGGAGCGAGAGTGTCC
TCTCTGCCGCCTTGTGGGACCCTATGTGCCCCTGTGGCTCGGTCAGGAGGCCGGTCTCTGCCTGGACCCT
GGGCCACCCAGCCACGCTTTTGCACCCTGTGGCCACGTCTGTTCTGAGAAGACTGCCCGCTACTGGGCTC
AGACACCGCTGCCGCACGGCACCCATGCTTTCCACGCTGCCTGCCCCTTCTGTGGAGCTTGGCTCACCGG
TGAGCTTGGCTGTGTCCGCCTCATTTTCCAGGGGCCACTGGACTAG

Translation (411 aa):
MVLEGNPDVGSPRTSDLQHPGSQGSCILSCPGEEALAGEEPIKYGELIVLGYNGCLASGDKGRRRSRLAL
SRRPHANGVKPDVMHHISTPLVSKIGRSTENMIDFVVTDTSPGGGATEGPSAQSTISRYACRILCDRRPP
YTARIYAAGFDASSNIFLGERAAKWRTPDGLMDGLTTNGVLVMHPAGGFSEDSAPGVWREISVCGNVYTL
RDSRSAQQRGKLVENESNVLQDGSLIDLCGATLLWRTPAGLLRAPTLKQLEAQRQEANAARPQCPVGLST
LAFPSPARGRTAPDKQQPWVYVRCGHVHGYHGWGCRREQGPQERECPLCRLVGPYVPLWLGQEAGLCLDP
GPPSHAFAPCGHVCSEKTARYWAQTPLPHGTHAFHAACPFCGAWLTGELGCVRLIFQGPLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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