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Report for CCDS88504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88504.1 Public Mus musculus 13 Polk 23 108 98 CCDS HistoryNCBI Gene:27015Re-query CCDS DB by CCDS ID:88504.1Re-query CCDS DB by GeneID:27015See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000221645.1 ENSMUSP00000152178.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221645.1Link to Ensembl Protein Viewer:ENSMUSP00000152178.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221645Re-query CCDS DB by Protein ID:ENSMUSP00000152178
Original member Current member NCBI NM_001347604.1 NP_001334533.1 Accepted alive Link to Nucleotide Sequence:NM_001347604.1Link to Protein Sequence:NP_001334533.1Re-query CCDS DB by Nucleotide ID:NM_001347604Re-query CCDS DB by Protein ID:NP_001334533Link to BLAST:NP_001334533.1

Chromosomal Locations for CCDS 88504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 96482170 96482254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96482458 96482491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96486808 96486979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96489182 96489278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96490937 96490969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96493829 96493995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96495408 96495532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96496603 96496842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96501519 96501672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96504511 96504642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96508212 96508364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96516639 96516758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96519029 96519160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGGATAACACAAAGGAAAAGGACAACTTCAAAGACGACCTCCTGCTCCGCATGGGACTAAACGATAACA
AAGCAGGCATGGAAGGGTTGGATAAGGAGAAAATTAACAAAATTATCATGGAAGCCACAAAGGGGTCCAG
ATTTTATGGAAATGAGCTCAAGAAGGAAAAGCAAGTCAATCAACGGATTGAAAATATGATGCAACAAAAA
GCTCAAATTACCAGCCAGCAACTAAGGAAAGCTCAATTACAGGTTGACAAATTTGCAATGGAGTTAGAAC
GGAACCGGAATTTGAACAATACCATAGTTCATGTTGACATGGACGCTTTCTATGCAGCTGTGGAAATGAG
GGACAACCCGGAACTGAAGGATAAACCCATTGCTGTAGGATCCATGAGCATGTTGGCTACTTCGAATTAC
CATGCAAGGAGGTTTGGTGTCCGTGCAGCCATGCCAGGATTTATTGCTAAGAGGCTCTGCCCACAACTTA
TTATAGTGCCCCCAAACTTTGACAAATATAGAGCTGTGAGTAAGGAGGTTAAGGAGATACTTGCTGAATA
TGATCCCAATTTTATGGCCATGAGTCTGGACGAAGCCTACTTGAATATAACACAGCACTTGCAGGAAAGG
CAAGATTGGCCTGAGGACAAAAGAAGATACTTCATCAAGATGGGAAACTACTTAAAAATCGACACACCCA
GACAGGAAGCTAACGAGCTGACTGAGTATGAGCGGTCCATCTCCCCGCTGCTTTTTGAAGATAGTCCTCC
TGATTTGCAACCCCAAGGAAGTCCTTTCCAACTGAACTCTGAAGAACAAAACAATCCTCAAATAGCCCAA
AATTCAGTTGTTTTTGGAACATCAGCTGAGGAAGTGGTAAAGGAAATTCGCTTCAGAATTGAACAAAAAA
CAACGCTGACAGCCAGCGCAGGCATCGCCCCCAATACAATGTTAGCAAAAGTGTGCAGTGATAAGAATAA
GCCAAACGGACAGTACCAGATCCTTCCCAGCAGGAGCGCGGTGATGGACTTCATCAAGGACCTGCCTATT
AGAAAGGTTTCTGGGATAGGAAAAGTTACAGAGAAAATGTTAATGGCTCTCGGGATTGTTACTTGCACAG
AACTCTACCAACAGAGAGCGTTGCTGTCTCTCCTTTTCTCTGAAACCTCTTGGCATTATTTTCTTCACAT
CGCGCTGGGTCTAGGTTCAACAGACCTGGCAAGGGATGGAGAAAGGAAAAGCATGAGTGTTGAAAGGACA
TTCAGTGAGATAAGTAAGACAGAGGAACAGTACAGCCTGTGCCAAGAACTGTGCGCTGAGCTCGCCCACG
ACCTCCAGAAGGAAGGACTTAAGGGAAGAACCGTCACCATTAAGCTGAAGAACGTGAATTTTGAAGTAAA
AACTCGTGCATCTACCGTTCCGGCCGCCATTTCTACTGCAGAGGAAATATTTGCCATTGCCAAGGAGCTG
CTAAGGACAGAAGTTAATGTGGGTTCTCCACACCCCCTGCGGTTAAGACTGATGGACAGACTTCAGAAGG
CTTCAGGAAGGACCAAAAGGCCAGGAACGAAGACAAAGAGCTCAACTTTGAAGAAAACAAAGCCCCGAGA
TCCCAGACACACCCTTGATGGATTTTTTAAATGA

Translation (547 aa):
MDNTKEKDNFKDDLLLRMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQK
AQITSQQLRKAQLQVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNY
HARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER
QDWPEDKRRYFIKMGNYLKIDTPRQEANELTEYERSISPLLFEDSPPDLQPQGSPFQLNSEEQNNPQIAQ
NSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKDLPI
RKVSGIGKVTEKMLMALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGSTDLARDGERKSMSVERT
FSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKEL
LRTEVNVGSPHPLRLRLMDRLQKASGRTKRPGTKTKSSTLKKTKPRDPRHTLDGFFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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