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Report for CCDS23620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23620.1 Public Mus musculus 9 Csrnp1 23 108 98 CCDS HistoryNCBI Gene:215418Re-query CCDS DB by CCDS ID:23620.1Re-query CCDS DB by GeneID:215418See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035101.8 ENSMUSP00000035101.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035101.8Link to Ensembl Protein Viewer:ENSMUSP00000035101.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035101Re-query CCDS DB by Protein ID:ENSMUSP00000035101
Original member Current member EBI ENSMUST00000215916.1 ENSMUSP00000149214.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215916.1Link to Ensembl Protein Viewer:ENSMUSP00000149214.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215916Re-query CCDS DB by Protein ID:ENSMUSP00000149214
Original member Current member EBI ENSMUST00000214058.1 ENSMUSP00000150628.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214058.1Link to Ensembl Protein Viewer:ENSMUSP00000150628.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214058Re-query CCDS DB by Protein ID:ENSMUSP00000150628
Original member Current member NCBI NM_001357560.1 NP_001344489.1 Accepted alive Link to Nucleotide Sequence:NM_001357560.1Link to Protein Sequence:NP_001344489.1Re-query CCDS DB by Nucleotide ID:NM_001357560Re-query CCDS DB by Protein ID:NP_001344489Link to BLAST:NP_001344489.1
Original member Current member NCBI NM_001357561.1 NP_001344490.1 Accepted alive Link to Nucleotide Sequence:NM_001357561.1Link to Protein Sequence:NP_001344490.1Re-query CCDS DB by Nucleotide ID:NM_001357561Re-query CCDS DB by Protein ID:NP_001344490Link to BLAST:NP_001344490.1
Original member Current member NCBI NM_001357562.1 NP_001344491.1 Accepted alive Link to Nucleotide Sequence:NM_001357562.1Link to Protein Sequence:NP_001344491.1Re-query CCDS DB by Nucleotide ID:NM_001357562Re-query CCDS DB by Protein ID:NP_001344491Link to BLAST:NP_001344491.1
Original member Current member NCBI NM_153287.4 NP_695019.1 Accepted alive Link to Nucleotide Sequence:NM_153287.4Link to Protein Sequence:NP_695019.1Re-query CCDS DB by Nucleotide ID:NM_153287Re-query CCDS DB by Protein ID:NP_695019Link to BLAST:NP_695019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344489.1 583 P59054 583 100% 0 0
NP_001344490.1 583 P59054 583 100% 0 0
NP_001344491.1 583 P59054 583 100% 0 0
NP_695019.1 583 P59054 583 100% 0 0

Chromosomal Locations for CCDS 23620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 119972240 119973211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119973364 119973678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119974154 119974413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119977002 119977206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGACTGGGCTACTGAAGAGGAAGTTTGACCAGCTGGAAGAGGACGACTCCAGTTCCTCCTCCTCCTCAT
CGTTCTCTAGCCGGCTCTCTCTCTCCTCCTTCCCCGCCTCTTCTGCCTCCCCTGCCTGGAACTCTGATGA
GGAGGGACCAGGTGGTCAGGCACCCCAGTCTGATCAGGACTCCTGTGGCCTCCAGAGTTTCACTCCCCCG
TCCATCCTGAAGCGGGCTCCTCGGGAGCGTCCAGGTCACGTGGCCTTTAACGGCATCACCGTCTACTATT
TCCCACGGTGCCAGGGATTCACCAGTGTGCCCAGCCGTGGTGGCTGTACCCTGGGCATGGCTTCTCGGCA
CAGCACCTGCCGCCTTTTCTCCTTAGCTGAGTTTACACAGGAGCAGGTCCGGGCTCGGCGTGAGAAGCTC
CGCCGCCGTTTAAAGGAGGAGAAGCTGGAGATGCTGAGGTGGAAGTTTTCAGTGGCTGGAGTTCCGGAGT
CAGGGGCAGGCGTGCCTCTCACAGCGGATGCCATCGATGACGCCTCTGTAGAGGAGGACTTGGCAGTGGC
CGTGGCAAATGGCCGCCTGGAGGAAGCCAATTTCCTCCAGCCCCATCCACCTCGGCAGCGACGGGCTCTC
CTTCGGGCTTCCGGCGTTCGAAGGATTGACCGAGAGGAGAAGCGGGAGCTGCAGGTGCTGCGCCAGTCCC
GGGAGGATTGTGGTTGTCACTGTGATGGCGTCTGTGACCCTGAGACCTGCAGTTGCAGCTTGGCCGGCAT
TAAGTGCCAGATGGATCACACGTCCTTCCCCTGTGGCTGCTGCAGGGAGGGCTGCGAGAACCCCAATGGT
CGAGTGGAATTCAATCAGACAAGAGTTCAGACGCACTTCATTCACACCCTCACCCGCCTGCAGATGGAGC
AGGGTGCCGAGAGCTTGGGGGACCTGGAGTCCCCCGTGGAGGACACTCCTGTTGAACAAGCCGCGCTTTC
CCCCTTTCCGCCTTCCAAGCCCCCTGTGAGCAGTGAACTGGGGGACAGCAGTTGCAGCAGCGATATGACA
GACTCTTCCACGACCTTGTCCTCTGGCAGCAGCGAGCCTCCAAACCACCCTGCCCACCCCAGCCTGCCAG
GTCCCAGCTTCCGGTCTGGCGTAGATGAAGACAGCCTGGAACAGATCCTGAATTTCAGTGACTCTGACCT
CGGAATTGAGGAGGAGGAGGAGGAGGGAGGGGGTGTGGGCAACTTGGATAACCTCAGCTGCTTCCATCTG
GCTGACATCTTTGGTACCGGTGACCCCGGCAGCCTGGCCAGCTGGACTCACAGCCAGTCTGGCTCTAGCC
TCGCATCGGGCATCCTAGATGAGAATGCCAACCTGGACGCCAGTTGCTTCCTGAACAGCGGACTTGGAGG
GCTGAGAGAAGGTAGCCTCCCTGGCAGTTCTGGGTCCCCTGAGGGGGACGCCGTCCAGAGCAGCTCCTGG
GACCTCAGCTTATCCTCCTGTGACTCCTTTGAGCTTCTCCAGGCTCTGCCAGATTATAGTCTGGGACCTC
ACTATACTTCCCGAAGGGTGTCGGGCAGCCCGGATAGCCTTGAGACCTTCCACCCATTGCCCAGCTTCTC
TCCACCACGGGATGCGAGCACTTGCTTCCTGGAGTCTCTCGTGGGCCTGTCTGAGCCGGTTACAGAAGTC
CTGGCACCCCTTCTGGAGAGCCAGTTTGAGGATGCTGCCTTGGCACCTTTGTTGGAGCCTGTGCCAGTGT
AA

Translation (583 aa):
MTGLLKRKFDQLEEDDSSSSSSSSFSSRLSLSSFPASSASPAWNSDEEGPGGQAPQSDQDSCGLQSFTPP
SILKRAPRERPGHVAFNGITVYYFPRCQGFTSVPSRGGCTLGMASRHSTCRLFSLAEFTQEQVRARREKL
RRRLKEEKLEMLRWKFSVAGVPESGAGVPLTADAIDDASVEEDLAVAVANGRLEEANFLQPHPPRQRRAL
LRASGVRRIDREEKRELQVLRQSREDCGCHCDGVCDPETCSCSLAGIKCQMDHTSFPCGCCREGCENPNG
RVEFNQTRVQTHFIHTLTRLQMEQGAESLGDLESPVEDTPVEQAALSPFPPSKPPVSSELGDSSCSSDMT
DSSTTLSSGSSEPPNHPAHPSLPGPSFRSGVDEDSLEQILNFSDSDLGIEEEEEEGGGVGNLDNLSCFHL
ADIFGTGDPGSLASWTHSQSGSSLASGILDENANLDASCFLNSGLGGLREGSLPGSSGSPEGDAVQSSSW
DLSLSSCDSFELLQALPDYSLGPHYTSRRVSGSPDSLETFHPLPSFSPPRDASTCFLESLVGLSEPVTEV
LAPLLESQFEDAALAPLLEPVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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