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Report for CCDS90111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90111.1 Public Mus musculus 6 Zfp248 23 108 98 CCDS HistoryNCBI Gene:72720Re-query CCDS DB by CCDS ID:90111.1Re-query CCDS DB by GeneID:72720See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161519.7 ENSMUSP00000124539.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161519.7Link to Ensembl Protein Viewer:ENSMUSP00000124539.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161519Re-query CCDS DB by Protein ID:ENSMUSP00000124539
Original member Current member NCBI NM_001361899.1 NP_001348828.1 Accepted alive Link to Nucleotide Sequence:NM_001361899.1Link to Protein Sequence:NP_001348828.1Re-query CCDS DB by Nucleotide ID:NM_001361899Re-query CCDS DB by Protein ID:NP_001348828Link to BLAST:NP_001348828.1
Original member Current member NCBI NM_001361900.1 NP_001348829.1 Accepted alive Link to Nucleotide Sequence:NM_001361900.1Link to Protein Sequence:NP_001348829.1Re-query CCDS DB by Nucleotide ID:NM_001361900Re-query CCDS DB by Protein ID:NP_001348829Link to BLAST:NP_001348829.1
Original member Current member NCBI NM_001361901.1 NP_001348830.1 Accepted alive Link to Nucleotide Sequence:NM_001361901.1Link to Protein Sequence:NP_001348830.1Re-query CCDS DB by Nucleotide ID:NM_001361901Re-query CCDS DB by Protein ID:NP_001348830Link to BLAST:NP_001348830.1

Chromosomal Locations for CCDS 90111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118428896 118430323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGTTCACCAACAAGATCACAAACCTAGAGGGTGGAGGTAACACAAGAGAAACTCCCAGTCCAGACATTG
ACTCTGTATCTTCAAGAAGTTTTCTGCTCAAAGTATGTGACTCATGTGAAATGAATTTAAAGAATGTTTC
AGCTGTAATTATTAGCAAAAAGAACTATTCCAGAAAGAAGCTTAACGAGTTTAATATACATAAGAAACCA
CTCCCTGACAGTAGGCGTGAGAAGATTCCTGTAGGAATAAAGTCATGTGACTATGATGGGGAAAGGGATG
GCGTCCGTCTGTGCCGGGATCTCGCTCGGCCAGTTTCTCATCAGCCTTTTGAGTATAACGAAACAGGACA
AGGCTTCTGCGAGGAAGTGGCCCTTTGTACAAGTCAGAACTCTCAGCTAGGGGAGACTCTCTATAAGCAC
ACTGAATGTGGAAGAACTTTCGTTGACAGTTTGAAGCTTAGTGTATCTCAGAAAACACGTTTGCATACAG
AACTTCATGAGTGCAGTATTTGTAGAAAGTCCTTCTATGTGGATTTGCAGTTTGGACATCACACAGCTCT
CTCAGGAAGCAGTCCTTACGAGCGTAACGAATATGAGAAACTCTTCTGTGACGGTACAGCTTTCATCGTC
CATCAGGAAGCTTACACGAGAAAGATCGCCCAAGAGTATAAAGTGAGTAACAGAACTTGGGGAAAGCCAG
CTCTCTTCAAACATCAGATAATACAGATGGGAGGGAAACCCTATGAATACTATGAAAACAGGAAAAATTT
CAGCAAAAAATCACATCCCACCCAGCCTCGAAGACCTCACGTGGGAGAAAAGACGTTTGAATGTGGTGAA
TGTGGTAAAATGTTTTGGGAGAAATCGAACCTTACCCAGCATCAGAGAACACACACCGGAGAGAAACCGT
ATGAGTGTACCGAATGTGGGAAAGCCTTCTGCCAGAAGCCACACCTTACCAACCATCAGCGGACACACAC
GGGAGAGAAACCCTATGAGTGCAAGCAATGCGGAAAGACGTTCTGTGTCAAGTCAAACCTTACTGAGCAT
CAAAGGACACACACTGGGGAGAAACCCTATGAATGCAACGCATGTAGGAAGTCCTTCTGCCACCGGTCAG
CCCTAACTGTCCATCAGAGAACACATACAGGAGAGAAACCATTCATATGCAGTGAGTGCGGGAAGTCGTT
TTGTGTGAAGTCAAACCTGATTGTCCATCAGCGAACTCATACAGGGGAGAAACCCTACAAGTGCAACGAG
TGTGGGAAAACGTTCTGTGAGAAATCGGCGCTCACCAAACACCAGAGAACTCACACAGGGGAGAAACCCT
ATGAATGTCACGTGTGTGGGAAGACCTTCAGTCAGAGGTCGGTACTTACCAAGCATCTGAGAATCCACAC
GAGGGTGAAAGCTCTTTTAGCATCCTGA

Translation (475 aa):
MFTNKITNLEGGGNTRETPSPDIDSVSSRSFLLKVCDSCEMNLKNVSAVIISKKNYSRKKLNEFNIHKKP
LPDSRREKIPVGIKSCDYDGERDGVRLCRDLARPVSHQPFEYNETGQGFCEEVALCTSQNSQLGETLYKH
TECGRTFVDSLKLSVSQKTRLHTELHECSICRKSFYVDLQFGHHTALSGSSPYERNEYEKLFCDGTAFIV
HQEAYTRKIAQEYKVSNRTWGKPALFKHQIIQMGGKPYEYYENRKNFSKKSHPTQPRRPHVGEKTFECGE
CGKMFWEKSNLTQHQRTHTGEKPYECTECGKAFCQKPHLTNHQRTHTGEKPYECKQCGKTFCVKSNLTEH
QRTHTGEKPYECNACRKSFCHRSALTVHQRTHTGEKPFICSECGKSFCVKSNLIVHQRTHTGEKPYKCNE
CGKTFCEKSALTKHQRTHTGEKPYECHVCGKTFSQRSVLTKHLRIHTRVKALLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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