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Report for CCDS34230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34230.1 Public Homo sapiens 5 P4HA2 24 110 108 CCDS HistoryNCBI Gene:8974Re-query CCDS DB by CCDS ID:34230.1Re-query CCDS DB by GeneID:8974See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34230.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360568.8 ENSP00000353772.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360568.8Link to Ensembl Protein Viewer:ENSP00000353772.3Re-query CCDS DB by Nucleotide ID:ENST00000360568Re-query CCDS DB by Protein ID:ENSP00000353772
Original member Current member EBI ENST00000379086.5 ENSP00000368379.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379086.5Link to Ensembl Protein Viewer:ENSP00000368379.1Re-query CCDS DB by Nucleotide ID:ENST00000379086Re-query CCDS DB by Protein ID:ENSP00000368379
Original member Current member EBI ENST00000379100.7 ENSP00000368394.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379100.7Link to Ensembl Protein Viewer:ENSP00000368394.2Re-query CCDS DB by Nucleotide ID:ENST00000379100Re-query CCDS DB by Protein ID:ENSP00000368394
Original member Current member NCBI NM_001017974.2 NP_001017974.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017974.2Link to Protein Sequence:NP_001017974.1Re-query CCDS DB by Nucleotide ID:NM_001017974Re-query CCDS DB by Protein ID:NP_001017974Link to BLAST:NP_001017974.1
Original member Current member NCBI NM_001142598.2 NP_001136070.1 Accepted alive Link to Nucleotide Sequence:NM_001142598.2Link to Protein Sequence:NP_001136070.1Re-query CCDS DB by Nucleotide ID:NM_001142598Re-query CCDS DB by Protein ID:NP_001136070Link to BLAST:NP_001136070.1
Original member Current member NCBI NM_001365678.2 NP_001352607.1 Accepted alive Link to Nucleotide Sequence:NM_001365678.2Link to Protein Sequence:NP_001352607.1Re-query CCDS DB by Nucleotide ID:NM_001365678Re-query CCDS DB by Protein ID:NP_001352607Link to BLAST:NP_001352607.1
Original member Current member NCBI NM_001365679.2 NP_001352608.1 Accepted alive Link to Nucleotide Sequence:NM_001365679.2Link to Protein Sequence:NP_001352608.1Re-query CCDS DB by Nucleotide ID:NM_001365679Re-query CCDS DB by Protein ID:NP_001352608Link to BLAST:NP_001352608.1
Original member Current member NCBI NM_001365680.2 NP_001352609.1 Accepted alive Link to Nucleotide Sequence:NM_001365680.2Link to Protein Sequence:NP_001352609.1Re-query CCDS DB by Nucleotide ID:NM_001365680Re-query CCDS DB by Protein ID:NP_001352609Link to BLAST:NP_001352609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017974.1 533 O15460-2 533 100% 0 0
NP_001136070.1 533 O15460-2 533 100% 0 0
NP_001352607.1 533 O15460-2 533 100% 0 0
NP_001352608.1 533 O15460-2 533 100% 0 0
NP_001352609.1 533 O15460-2 533 100% 0 0

Chromosomal Locations for CCDS 34230.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132193010 132193080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132194926 132195022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132195412 132195480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132198321 132198380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132198879 132198932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132203748 132203847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132204082 132204152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132207708 132207884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132209138 132209331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132210284 132210523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132213916 132214053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132217197 132217348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132217752 132217848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132218545 132218626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGAAACTCTGGGTGTCTGCATTGCTGATGGCCTGGTTTGGTGTCCTGAGCTGTGTGCAGGCCGAATTCT
TCACCTCTATTGGGCACATGACTGACCTGATTTATGCAGAGAAAGAGCTGGTGCAGTCTCTGAAAGAGTA
CATCCTTGTGGAGGAAGCCAAGCTTTCCAAGATTAAGAGCTGGGCCAACAAAATGGAAGCCTTGACTAGC
AAGTCAGCTGCTGATGCTGAGGGCTACCTGGCTCACCCTGTGAATGCCTACAAACTGGTGAAGCGGCTAA
ACACAGACTGGCCTGCGCTGGAGGACCTTGTCCTGCAGGACTCAGCTGCAGGTTTTATCGCCAACCTCTC
TGTGCAGCGGCAGTTCTTCCCCACTGATGAGGACGAGATAGGAGCTGCCAAAGCCCTGATGAGACTTCAG
GACACATACAGGCTGGACCCAGGCACAATTTCCAGAGGGGAACTTCCAGGAACCAAGTACCAGGCAATGC
TGAGTGTGGATGACTGCTTTGGGATGGGCCGCTCGGCCTACAATGAAGGGGACTATTATCATACGGTGTT
GTGGATGGAGCAGGTGCTAAAGCAGCTTGATGCCGGGGAGGAGGCCACCACAACCAAGTCACAGGTGCTG
GACTACCTCAGCTATGCTGTCTTCCAGTTGGGTGATCTGCACCGTGCCCTGGAGCTCACCCGCCGCCTGC
TCTCCCTTGACCCAAGCCACGAACGAGCTGGAGGGAATCTGCGGTACTTTGAGCAGTTATTGGAGGAAGA
GAGAGAAAAAACGTTAACAAATCAGACAGAAGCTGAGCTAGCAACCCCAGAAGGCATCTATGAGAGGCCT
GTGGACTACCTGCCTGAGAGGGATGTTTACGAGAGCCTCTGTCGTGGGGAGGGTGTCAAACTGACACCCC
GTAGACAGAAGAGGCTTTTCTGTAGGTACCACCATGGCAACAGGGCCCCACAGCTGCTCATTGCCCCCTT
CAAAGAGGAGGACGAGTGGGACAGCCCGCACATCGTCAGGTACTACGATGTCATGTCTGATGAGGAAATC
GAGAGGATCAAGGAGATCGCAAAACCTAAACTTGCACGAGCCACCGTTCGTGATCCCAAGACAGGAGTCC
TCACTGTCGCCAGCTACCGGGTTTCCAAAAGCTCCTGGCTAGAGGAAGATGATGACCCTGTTGTGGCCCG
AGTAAATCGTCGGATGCAGCATATCACAGGGTTAACAGTAAAGACTGCAGAATTGTTACAGGTTGCAAAT
TATGGAGTGGGAGGACAGTATGAACCGCACTTCGACTTCTCTAGGCGACCTTTTGACAGCGGCCTCAAAA
CAGAGGGGAATAGGTTAGCGACGTTTCTTAACTACATGAGTGATGTAGAAGCTGGTGGTGCCACCGTCTT
CCCTGATCTGGGGGCTGCAATTTGGCCTAAGAAGGGTACAGCTGTGTTCTGGTACAACCTCTTGCGGAGC
GGGGAAGGTGACTACCGAACAAGACATGCTGCCTGCCCTGTGCTTGTGGGCTGCAAGTGGGTCTCCAATA
AGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGACCTTGTGGATCAACAGAAGTTGACTGA

Translation (533 aa):
MKLWVSALLMAWFGVLSCVQAEFFTSIGHMTDLIYAEKELVQSLKEYILVEEAKLSKIKSWANKMEALTS
KSAADAEGYLAHPVNAYKLVKRLNTDWPALEDLVLQDSAAGFIANLSVQRQFFPTDEDEIGAAKALMRLQ
DTYRLDPGTISRGELPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTTKSQVL
DYLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEEEREKTLTNQTEAELATPEGIYERP
VDYLPERDVYESLCRGEGVKLTPRRQKRLFCRYHHGNRAPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEI
ERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVAN
YGVGGQYEPHFDFSRRPFDSGLKTEGNRLATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLRS
GEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPCGSTEVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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