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Report for CCDS548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
548.1 Public Homo sapiens 1 STIL 24 110 108 CCDS HistoryNCBI Gene:6491Re-query CCDS DB by CCDS ID:548.1Re-query CCDS DB by GeneID:6491See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 548.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360380.7 ENSP00000353544.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360380.7Link to Ensembl Protein Viewer:ENSP00000353544.3Re-query CCDS DB by Nucleotide ID:ENST00000360380Re-query CCDS DB by Protein ID:ENSP00000353544
Original member Current member NCBI NM_001282936.1 NP_001269865.1 Accepted alive Link to Nucleotide Sequence:NM_001282936.1Link to Protein Sequence:NP_001269865.1Re-query CCDS DB by Nucleotide ID:NM_001282936Re-query CCDS DB by Protein ID:NP_001269865Link to BLAST:NP_001269865.1
Original member Current member NCBI NM_003035.2 NP_003026.2 Accepted alive Link to Nucleotide Sequence:NM_003035.2Link to Protein Sequence:NP_003026.2Re-query CCDS DB by Nucleotide ID:NM_003035Re-query CCDS DB by Protein ID:NP_003026Link to BLAST:NP_003026.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269865.1 1287 Q15468-1 1287 100% 0 0
NP_003026.2 1287 Q15468-1 1287 100% 0 0

Chromosomal Locations for CCDS 548.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 47251136 47251922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47260289 47260539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47262903 47263113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47269635 47269866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47272076 47272241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47280241 47281209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47282345 47282459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47287551 47287660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47289435 47289585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47293458 47293544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47295765 47295848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47299905 47300152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47301561 47301748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47302234 47302346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47304889 47304996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47310276 47310319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3864 nt):
ATGGAGCCTATATATCCTTTTGCACGGCCCCAGATGAATACCAGGTTTCCTTCAAGCAGGATGGTACCTT
TCCACTTTCCTCCATCAAAATGTGCACTTTGGAACCCAACGCCAACTGGAGATTTCATCTACTTACATCT
CAGTTACTACAGAAATCCAAAGCTTGTGGTGACTGAGAAGACCATCCGACTTGCTTATCGTCATGCTAAG
CAGAATAAAAAAAATTCGTCATGCTTTTTACTTGGTTCTCTGACAGCAGACGAAGATGAAGAAGGTGTAA
CATTGACAGTAGATCGCTTTGATCCTGGTCGAGAAGTACCTGAATGCCTAGAAATAACCCCTACTGCTTC
TCTTCCTGGGGACTTTTTGATTCCATGCAAAGTTCATACTCAAGAACTTTGTTCAAGAGAAATGATAGTT
CACAGTGTAGATGACTTCAGTTCAGCTTTAAAGGCTCTACAGTGCCATATATGTAGCAAAGATTCCTTGG
ACTGTGGTAAGCTGCTTTCCCTAAGAGTTCATATCACTTCCAGGGAGAGTTTGGACAGTGTGGAATTTGA
CTTGCATTGGGCAGCAGTAACTCTAGCAAATAACTTTAAATGCACACCTGTGAAGCCCATCCCCATTATT
CCAACAGCTCTGGCAAGAAACTTGAGCAGTAATCTGAATATTTCTCAAGTTCAAGGGACTTATAAATATG
GATATCTTACCATGGATGAAACACGCAAATTGTTACTTTTGTTGGAATCTGATCCCAAGGTTTATTCTCT
ACCATTGGTGGGAATTTGGCTGTCTGGAATTACACATATCTATAGTCCTCAGGTATGGGCTTGCTGTTTG
CGATACATATTCAATTCTTCTGTTCAAGAAAGGGTTTTTTCAGAATCTGGAAATTTCATCATAGTTCTCT
ATTCTATGACACATAAGGAACCTGAGTTTTATGAATGCTTCCCTTGTGATGGCAAGATACCTGACTTTCG
GTTTCAGTTGCTAACCAGTAAGGAAACATTACATCTTTTCAAAAATGTTGAACCTCCTGACAAAAATCCA
ATCCGTTGTGAACTGAGCGCTGAAAGCCAAAATGCAGAAACAGAGTTTTTCAGTAAGGCTTCCAAGAATT
TTTCAATTAAGAGGTCTTCCCAAAAGTTATCTTCTGGGAAGATGCCAATACATGATCACGACTCTGGTGT
TGAAGATGAAGATTTTTCTCCAAGACCAATTCCTAGTCCTCATCCAGTGAGTCAGAAGATTTCTAAGATC
CAACCATCAGTTCCTGAACTTTCACTTGTGTTGGATGGCAATTTCATAGAATCAAACCCTCTGCCTACTC
CATTGGAAATGGTGAATAATGAAAATCCTCCTTTGATTAACCACTTGGAACACTTGAAGCCATTGCAACC
CCAGCTTTATGATGAGAAACACAGTCCAGAAGTTGAAGCTGGAGAGCCTTCCTTGAGAGGAATACCAAAT
CAGTTAAACCAGGATAAACCAGCTCTTTTGAGACACTGCAAAGTAAGACAGCCACCTGCCTATAAGAAAG
GGAACCCCCATACCAGGAACAGTATTAAACCATCTTCTCATAATGGGCCATCTCATGATATATTTGAAAA
GCTCCAAACAGTTTCTGCTGGAAATGTACAAAACGAAGAGTATCCTATAAGACCCTCCACACTTAATTCT
AGGCAGTCTTCTCTTGCCCCGCAGTCCCAACCACACGATTTTGTTTTTTCACCCCATAATTCAGGAAGAC
CAATGGAACTTCAGATACCTACTCCCCCACTGCCATCTTACTGTTCCACAAACGTTTGCAGGTGTTGTCA
GCATCATAGTCATATTCAATATAGTCCGCTAAATTCTTGGCAAGGAGCAAACACAGTTGGATCCATTCAA
GATGTCCAGTCTGAAGCCCTTCAAAAGCATTCATTATTTCACCCAAGTGGATGTCCAGCCCTGTACTGTA
ATGCATTCTGTTCTTCAAGTAGTCCTATAGCCTTGAGACCTCAGGGAGATATGGGCAGTTGTTCTCCCCA
CAGCAATATTGAACCATCGCCTGTGGCAAGACCGCCTTCACATATGGACTTATGTAACCCACAGCCTTGC
ACAGTGTGCATGCACACACCCAAGACTGAGTCAGATAATGGAATGATGGGACTATCTCCAGATGCATATC
GGTTCCTCACAGAACAAGACAGACAGCTAAGACTACTTCAGGCACAGATTCAGCGTTTGTTGGAAGCACA
GTCTCTGATGCCCTGTTCCCCTAAGACAACTGCTGTTGAAGACACAGTGCAAGCTGGAAGACAAATGGAG
TTGGTTTCTGTGGAAGCACAGTCTTCCCCTGGCTTGCACATGAGAAAAGGTGTAAGCATTGCTGTGAGCA
CAGGTGCTAGCTTGTTTTGGAATGCAGCAGGTGAGGATCAAGAGCCTGACTCTCAAATGAAGCAAGATGA
TACCAAAATTTCCAGTGAGGACATGAATTTTTCTGTCGATATTAATAATGAAGTCACAAGTCTTCCAGGT
AGTGCATCTTCATTAAAAGCAGTTGATATTCCCAGTTTTGAAGAGAGCAACATTGCTGTGGAAGAAGAAT
TTAACCAGCCACTTTCTGTATCCAACTCTTCTCTAGTTGTGAGAAAAGAACCTGATGTACCTGTGTTCTT
TCCAAGTGGCCAGCTGGCAGAAAGTGTAAGCATGTGTTTACAGACTGGACCAACAGGGGGTGCCAGTAAC
AATTCTGAAACATCAGAGGAACCAAAAATTGAGCATGTAATGCAACCCTTGCTTCATCAACCATCAGATA
ACCAGAAAATTTACCAGGATTTATTGGGTCAAGTAAACCACCTATTAAATAGTTCCTCCAAGGAAACTGA
GCAGCCGTCTACCAAAGCAGTAATTATCAGTCATGAATGCACCAGAACCCAAAACGTTTACCATACAAAG
AAAAAAACACATCATTCAAGACTGGTGGACAAAGATTGTGTCCTTAATGCAACTCTTAAGCAACTAAGAA
GCCTTGGAGTAAAAATTGATTCTCCCACTAAAGTGAAGAAAAATGCACATAACGTGGATCACGCCAGTGT
GTTGGCATGCATCAGCCCAGAAGCAGTGATCTCTGGATTAAACTGCATGTCATTTGCTAATGTTGGCATG
AGCGGCTTAAGCCCCAATGGTGTGGATTTGAGCATGGAGGCAAATGCTATAGCTCTGAAATATTTAAATG
AAAATCAGCTGTCACAACTGTCTGTCACTCGATCGAACCAAAATAATTGTGACCCATTCAGCCTTCTCCA
TATTAATACAGACAGAAGCACAGTGGGGCTTAGTTTAATTTCACCAAACAACATGTCATTTGCAACCAAA
AAATATATGAAGAGATATGGACTCCTACAAAGCAGTGACAATAGTGAAGATGAAGAGGAACCTCCCGACA
ATGCAGATAGCAAGAGTGAATATTTATTGAATCAGAACCTTAGGTCCATACCTGAACAGCTTGGTGGTCA
GAAAGAGCCTTCTAAGAATGACCATGAAATAATTAATTGTTCTAACTGTGAATCTGTGGGGACCAACGCA
GATACGCCAGTATTGAGAAATATTACAAATGAAGTTTTGCAGACAAAAGCAAAACAGCAGTTGACTGAAA
AGCCAGCTTTCTTAGTAAAGAACCTTAAACCAAGTCCTGCAGTGAACCTTCGAACCGGGAAAGCAGAGTT
CACTCAACATCCTGAGAAAGAAAATGAAGGGGACATTACAATTTTTCCTGAAAGTTTGCAACCTTCTGAA
ACGCTAAAGCAGATGAATAGCATGAATTCAGTAGGCACCTTCTTAGATGTAAAACGTCTCAGACAGTTAC
CAAAATTATTTTAA

Translation (1287 aa):
MEPIYPFARPQMNTRFPSSRMVPFHFPPSKCALWNPTPTGDFIYLHLSYYRNPKLVVTEKTIRLAYRHAK
QNKKNSSCFLLGSLTADEDEEGVTLTVDRFDPGREVPECLEITPTASLPGDFLIPCKVHTQELCSREMIV
HSVDDFSSALKALQCHICSKDSLDCGKLLSLRVHITSRESLDSVEFDLHWAAVTLANNFKCTPVKPIPII
PTALARNLSSNLNISQVQGTYKYGYLTMDETRKLLLLLESDPKVYSLPLVGIWLSGITHIYSPQVWACCL
RYIFNSSVQERVFSESGNFIIVLYSMTHKEPEFYECFPCDGKIPDFRFQLLTSKETLHLFKNVEPPDKNP
IRCELSAESQNAETEFFSKASKNFSIKRSSQKLSSGKMPIHDHDSGVEDEDFSPRPIPSPHPVSQKISKI
QPSVPELSLVLDGNFIESNPLPTPLEMVNNENPPLINHLEHLKPLQPQLYDEKHSPEVEAGEPSLRGIPN
QLNQDKPALLRHCKVRQPPAYKKGNPHTRNSIKPSSHNGPSHDIFEKLQTVSAGNVQNEEYPIRPSTLNS
RQSSLAPQSQPHDFVFSPHNSGRPMELQIPTPPLPSYCSTNVCRCCQHHSHIQYSPLNSWQGANTVGSIQ
DVQSEALQKHSLFHPSGCPALYCNAFCSSSSPIALRPQGDMGSCSPHSNIEPSPVARPPSHMDLCNPQPC
TVCMHTPKTESDNGMMGLSPDAYRFLTEQDRQLRLLQAQIQRLLEAQSLMPCSPKTTAVEDTVQAGRQME
LVSVEAQSSPGLHMRKGVSIAVSTGASLFWNAAGEDQEPDSQMKQDDTKISSEDMNFSVDINNEVTSLPG
SASSLKAVDIPSFEESNIAVEEEFNQPLSVSNSSLVVRKEPDVPVFFPSGQLAESVSMCLQTGPTGGASN
NSETSEEPKIEHVMQPLLHQPSDNQKIYQDLLGQVNHLLNSSSKETEQPSTKAVIISHECTRTQNVYHTK
KKTHHSRLVDKDCVLNATLKQLRSLGVKIDSPTKVKKNAHNVDHASVLACISPEAVISGLNCMSFANVGM
SGLSPNGVDLSMEANAIALKYLNENQLSQLSVTRSNQNNCDPFSLLHINTDRSTVGLSLISPNNMSFATK
KYMKRYGLLQSSDNSEDEEEPPDNADSKSEYLLNQNLRSIPEQLGGQKEPSKNDHEIINCSNCESVGTNA
DTPVLRNITNEVLQTKAKQQLTEKPAFLVKNLKPSPAVNLRTGKAEFTQHPEKENEGDITIFPESLQPSE
TLKQMNSMNSVGTFLDVKRLRQLPKLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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