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Report for CCDS1413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1413.1 Public Homo sapiens 1 CSRP1 24 110 108 CCDS HistoryNCBI Gene:1465Re-query CCDS DB by CCDS ID:1413.1Re-query CCDS DB by GeneID:1465See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1413.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340006.7 ENSP00000345079.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340006.7Link to Ensembl Protein Viewer:ENSP00000345079.2Re-query CCDS DB by Nucleotide ID:ENST00000340006Re-query CCDS DB by Protein ID:ENSP00000345079
Original member Current member EBI ENST00000367306.5 ENSP00000356275.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367306.5Link to Ensembl Protein Viewer:ENSP00000356275.1Re-query CCDS DB by Nucleotide ID:ENST00000367306Re-query CCDS DB by Protein ID:ENSP00000356275
Original member Current member EBI ENST00000532460.5 ENSP00000434147.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532460.5Link to Ensembl Protein Viewer:ENSP00000434147.1Re-query CCDS DB by Nucleotide ID:ENST00000532460Re-query CCDS DB by Protein ID:ENSP00000434147
Original member Current member EBI ENST00000533432.5 ENSP00000436792.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533432.5Link to Ensembl Protein Viewer:ENSP00000436792.1Re-query CCDS DB by Nucleotide ID:ENST00000533432Re-query CCDS DB by Protein ID:ENSP00000436792
Original member Current member NCBI NM_001193571.2 NP_001180500.1 Accepted alive Link to Nucleotide Sequence:NM_001193571.2Link to Protein Sequence:NP_001180500.1Re-query CCDS DB by Nucleotide ID:NM_001193571Re-query CCDS DB by Protein ID:NP_001180500Link to BLAST:NP_001180500.1
Original member Current member NCBI NM_001193572.2 NP_001180501.1 Accepted alive Link to Nucleotide Sequence:NM_001193572.2Link to Protein Sequence:NP_001180501.1Re-query CCDS DB by Nucleotide ID:NM_001193572Re-query CCDS DB by Protein ID:NP_001180501Link to BLAST:NP_001180501.1
Original member Current member NCBI NM_004078.3 NP_004069.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004078.3Link to Protein Sequence:NP_004069.1Re-query CCDS DB by Nucleotide ID:NM_004078Re-query CCDS DB by Protein ID:NP_004069Link to BLAST:NP_004069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180500.1 193 P21291 193 100% 0 0
NP_001180501.1 193 P21291 193 100% 0 0
NP_004069.1 193 P21291 193 100% 0 0

Chromosomal Locations for CCDS 1413.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201484713 201484789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201485283 201485376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201488855 201488984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201490176 201490344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201496192 201496303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGCCGAACTGGGGAGGAGGCAAGAAATGTGGGGTGTGTCAGAAGACGGTTTACTTTGCCGAAGAGGTTC
AGTGCGAAGGCAACAGCTTCCATAAATCCTGCTTCCTGTGCATGGTCTGCAAGAAGAATCTGGACAGTAC
CACTGTGGCCGTGCATGGTGAGGAGATTTACTGCAAGTCCTGCTACGGCAAGAAGTATGGGCCCAAAGGC
TATGGCTACGGGCAGGGCGCAGGCACCCTCAGCACTGACAAGGGGGAGTCGCTGGGTATCAAGCACGAGG
AAGCCCCTGGCCACAGGCCCACCACCAACCCCAATGCATCCAAATTTGCCCAGAAGATTGGTGGCTCCGA
GCGCTGCCCCCGATGCAGCCAGGCAGTCTATGCTGCGGAGAAGGTGATTGGTGCTGGGAAGTCCTGGCAT
AAGGCCTGCTTTCGATGTGCCAAGTGTGGCAAAGGCCTTGAGTCAACCACCCTGGCAGACAAGGATGGCG
AGATTTACTGCAAAGGATGTTATGCTAAAAACTTCGGGCCCAAGGGCTTTGGTTTTGGGCAAGGAGCTGG
GGCCTTGGTCCACTCTGAGTGA

Translation (193 aa):
MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKG
YGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWH
KACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALVHSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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