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Report for CCDS19590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19590.1 Reviewed, update pending Mus musculus 5 Cox6a1 23 108 98 CCDS HistoryNCBI Gene:12861Re-query CCDS DB by CCDS ID:19590.1Re-query CCDS DB by GeneID:12861See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 19590.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 19590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040154.8 ENSMUSP00000047661.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040154.8Link to Ensembl Protein Viewer:ENSMUSP00000047661.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040154Re-query CCDS DB by Protein ID:ENSMUSP00000047661
Original member NCBI NM_007748.4 NP_031774.1 Updated not alive Link to Nucleotide Sequence:NM_007748.4Link to Protein Sequence:NP_031774.1Re-query CCDS DB by Nucleotide ID:NM_007748Re-query CCDS DB by Protein ID:NP_031774
Current member NCBI NM_007748.5 NP_031774.2 Pending alive Link to Nucleotide Sequence:NM_007748.5Link to Protein Sequence:NP_031774.2Re-query CCDS DB by Nucleotide ID:NM_007748Re-query CCDS DB by Protein ID:NP_031774Link to BLAST:NP_031774.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031774.2 111 P43024 111 100% 0 0

Chromosomal Locations for CCDS 19590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115345843 115345926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115348565 115348707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115348839 115348950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGATGGCGTCGGCGGTGCTGTCAGCGTCTCGGGTCTCTCGGCCGCTGGGCCGGGCCCTCCCCGGGTTGA
GGCGGCCCATGTCGAGTGGCGCCCACGGCGAGGAGGGTTCAGCTCGGATGTGGAAGGCCCTCACCTACTT
CGTGGCGCTGCCCGGGGTGGGAGTGAGCATGCTCAACGTGTTCCTCAAGTCGCGGCACGAAGAGCACGAG
AGACCCCCGTTCGTTGCCTACCCTCACCTGCGCATCAGGACCAAGCCCTTCCCCTGGGGAGACGGTAACC
ATACCCTCTTCCACAACCCTCATGTGAACCCACTTCCGACCGGCTATGAAGATGAGTAA

Translation (112 aa):
MMASAVLSASRVSRPLGRALPGLRRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSRHEEHE
RPPFVAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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