NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16955.1 Public Mus musculus 2 Mmp24 23 108 98 CCDS HistoryNCBI Gene:17391Re-query CCDS DB by CCDS ID:16955.1Re-query CCDS DB by GeneID:17391See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029141.5 ENSMUSP00000029141.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029141.5Link to Ensembl Protein Viewer:ENSMUSP00000029141.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029141Re-query CCDS DB by Protein ID:ENSMUSP00000029141
Original member Current member NCBI NM_010808.4 NP_034938.3 Accepted alive Link to Nucleotide Sequence:NM_010808.4Link to Protein Sequence:NP_034938.3Re-query CCDS DB by Nucleotide ID:NM_010808Re-query CCDS DB by Protein ID:NP_034938Link to BLAST:NP_034938.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034938.3 618 Q9R0S2 618 100% 0 0

Chromosomal Locations for CCDS 16955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155775473 155775637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155792527 155792675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155798066 155798182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155799685 155799989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155807401 155807562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155810272 155810486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155812217 155812355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155813896 155814162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155815711 155816048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGCCGAGGAGCCGGGGCGGCCGCGCTGCGCCGGGCCAGGCCTCGCGCTGGAGCGGCTGGCGGGCCCCGG
GGCGGCTGCTGCCGCTGCTGCCCGCGCTCTGCTGCCTCGCGGCGGCGGCGGGGGCCGGGAAGCCGGCCGG
GGCGGACGCGCCCTTCGCTGGGCAGAACTGGTTAAAATCATATGGCTATCTGCTTCCCTATGAGTCGCGG
GCATCTGCGTTGCATTCTGGGAAGGCCTTGCAGTCCGCGGTCTCCACTATGCAGCAGTTTTACGGGATCC
CAGTCACCGGTGTGTTGGATCAGACAACAATCGAGTGGATGAAGAAACCTCGATGTGGCGTCCCTGATCA
TCCCCACTTGAGCAGGAGGAGGAGAAATAAGCGATATGCCCTAACTGGACAGAAGTGGAGGCAGAAACAC
ATCACCTACAGCATTCACAATTATACCCCAAAGGTGGGTGAGCTGGACACACGGAAGGCTATTCGTCAGG
CTTTCGATGTGTGGCAGAAGGTGACTCCACTGACCTTTGAAGAGGTGCCATACCATGAGATCAAAAGTGA
CCGGAAGGAGGCAGACATCATGATCTTCTTTGCTTCTGGTTTCCATGGTGACAGCTCCCCATTTGATGGG
GAAGGGGGATTCCTAGCCCATGCCTACTTTCCTGGCCCAGGGATCGGAGGAGACACTCACTTTGATTCAG
ATGAACCCTGGACGCTAGGAAATGCCAACCATGATGGCAATGACCTCTTCCTGGTGGCCGTGCATGAACT
GGGCCATGCACTGGGCTTGGAGCACTCTAATGACCCCAGTGCTATCATGGCTCCCTTCTACCAATACATG
GAGACACACAACTTCAAGCTACCGCAGGACGATCTCCAGGGCATCCAGAAGATTTACGGACCCCCAGCTG
AGCCTCTGGAGCCCACAAGGCCCCTCCCTACACTCCCGGTCCGCAGGATCCACTCGCCATCTGAGAGGAA
GCACGAGCGGCACCCAAGGCCCCCACGGCCGCCTCTTGGGGACCGGCCATCCACTCCAGGTGCCAAACCC
AACATCTGCGATGGCAACTTCAACACAGTGGCCCTCTTCCGAGGGGAGATGTTTGTGTTCAAGGATCGCT
GGTTCTGGCGCCTGCGCAATAACCGGGTGCAGGAAGGCTACCCCATGCAGATCGAACAGTTCTGGAAGGG
CCTGCCCGCCCGCATAGACGCAGCCTATGAAAGAGCTGACGGGAGATTCGTCTTCTTCAAAGGAGACAAG
TACTGGGTTTTCAAAGAAGTGACGGTGGAACCTGGGTACCCCCACAGCTTGGGGGAGCTGGGAAGCTGCC
TGCCCCGTGAAGGAATTGACACAGCTCTGCGCTGGGAACCTGTGGGCAAAACCTACTTCTTCAAAGGCGA
ACGATACTGGCGCTACAGCGAGGAGCGGCGAGCCACAGACCCTGGCTACCCCAAGCCCATCACCGTGTGG
AAGGGCATCCCGCAGGCTCCGCAAGGGGCCTTCATCAGCAAGGAAGGATATTACACCTACTTCTACAAAG
GCCGGGACTACTGGAAGTTTGACAACCAGAAACTGAGCGTGGAGCCAGGCTACCCACGCAACATCCTGCG
TGACTGGATGGGCTGCAAGCAGAAGGAGGTAGAGCGGCGTAAGGAGCGGAGGCTGCCCCAGGATGATGTG
GACATCATGGTGACCATCGATGACGTGCCAGGCTCTGTGAACGCTGTGGCTGTGGTTGTCCCCTGCACAC
TGTCCCTCTGCCTCCTGGTGCTGCTCTACACTATCTTCCAATTCAAGAACAAGGCGGGTCCTCAGCCCGT
CACCTACTATAAGCGGCCGGTCCAGGAGTGGGTATGA

Translation (618 aa):
MPRSRGGRAAPGQASRWSGWRAPGRLLPLLPALCCLAAAAGAGKPAGADAPFAGQNWLKSYGYLLPYESR
ASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKPRCGVPDHPHLSRRRRNKRYALTGQKWRQKH
ITYSIHNYTPKVGELDTRKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFASGFHGDSSPFDG
EGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNANHDGNDLFLVAVHELGHALGLEHSNDPSAIMAPFYQYM
ETHNFKLPQDDLQGIQKIYGPPAEPLEPTRPLPTLPVRRIHSPSERKHERHPRPPRPPLGDRPSTPGAKP
NICDGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERADGRFVFFKGDK
YWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVW
KGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCKQKEVERRKERRLPQDDV
DIMVTIDDVPGSVNAVAVVVPCTLSLCLLVLLYTIFQFKNKAGPQPVTYYKRPVQEWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH