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Report for CCDS25438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25438.1 Public Mus musculus 11 Stat5b 23 108 98 CCDS HistoryNCBI Gene:20851Re-query CCDS DB by CCDS ID:25438.1Re-query CCDS DB by GeneID:20851See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004143.2 ENSMUSP00000004143.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004143.2Link to Ensembl Protein Viewer:ENSMUSP00000004143.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000004143Re-query CCDS DB by Protein ID:ENSMUSP00000004143
Original member Current member EBI ENSMUST00000107358.8 ENSMUSP00000102981.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107358.8Link to Ensembl Protein Viewer:ENSMUSP00000102981.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107358Re-query CCDS DB by Protein ID:ENSMUSP00000102981
Original member Current member NCBI NM_001113563.2 NP_001107035.1 Accepted alive Link to Nucleotide Sequence:NM_001113563.2Link to Protein Sequence:NP_001107035.1Re-query CCDS DB by Nucleotide ID:NM_001113563Re-query CCDS DB by Protein ID:NP_001107035Link to BLAST:NP_001107035.1
Original member Current member NCBI NM_001362682.1 NP_001349611.1 Accepted alive Link to Nucleotide Sequence:NM_001362682.1Link to Protein Sequence:NP_001349611.1Re-query CCDS DB by Nucleotide ID:NM_001362682Re-query CCDS DB by Protein ID:NP_001349611Link to BLAST:NP_001349611.1
Original member Current member NCBI NM_011489.3 NP_035619.3 Accepted alive Link to Nucleotide Sequence:NM_011489.3Link to Protein Sequence:NP_035619.3Re-query CCDS DB by Nucleotide ID:NM_011489Re-query CCDS DB by Protein ID:NP_035619Link to BLAST:NP_035619.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107035.1 786 P42232 786 100% 0 0
NP_001349611.1 786 P42232 786 100% 0 0
NP_035619.3 786 P42232 786 100% 0 0

Chromosomal Locations for CCDS 25438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100783096 100783222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100783672 100783776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100784253 100784304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100787209 100787379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100788369 100788499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100788667 100788761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100790747 100790953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100794544 100794636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100796419 100796541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100796618 100796705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100797064 100797243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100797646 100797801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100798234 100798385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100798591 100798721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100801407 100801581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100802439 100802528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100804870 100805026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100808396 100808523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2361 nt):
ATGGCTATGTGGATACAGGCTCAGCAGCTCCAGGGCGATGCCCTTCACCAGATGCAGGCCTTGTACGGCC
AGCATTTCCCCATCGAGGTGCGACATTATTTATCACAGTGGATCGAAAGCCAAGCCTGGGACTCAATAGA
TCTTGATAATCCACAGGAGAACATTAAGGCCACCCAGCTCCTGGAGGGCCTGGTGCAGGAGCTGCAGAAG
AAGGCGGAGCACCAGGTGGGGGAAGATGGGTTTTTGCTGAAGATCAAGCTGGGGCACTATGCCACACAGC
TCCAGAGCACGTACGACCGCTGCCCCATGGAGCTGGTTCGCTGTATCCGGCACATTCTGTACAACGAACA
GAGGCTGGTTCGCGAAGCCAACAACGGCAGCTCTCCAGCTGGAAGTCTTGCTGACGCCATGTCCCAGAAG
CACCTTCAGATCAACCAAACGTTTGAGGAGCTGCGCCTGATCACACAGGACACGGAGAACGAGCTGAAGA
AGCTGCAGCAGACCCAAGAGTACTTCATCATCCAGTACCAGGAGAGCCTGCGGATCCAAGCTCAGTTTGC
CCAGCTGGGACAGCTGAACCCCCAGGAGCGCATGAGCAGGGAGACGGCCCTCCAGCAGAAGCAAGTGTCC
CTGGAGACCTGGCTGCAGCGAGAGGCACAGACACTGCAGCAGTACCGAGTGGAGCTGGCTGAGAAGCACC
AGAAGACCCTGCAGCTGCTGCGGAAGCAGCAGACCATCATCCTGGACGACGAGCTGATCCAGTGGAAGCG
GAGACAGCAGCTGGCCGGGAACGGGGGTCCCCCCGAGGGCAGCCTGGACGTGCTGCAGTCCTGGTGTGAG
AAGCTGGCCGAGATCATCTGGCAGAACCGGCAGCAGATCCGCAGGGCTGAGCACTTGTGCCAGCAGCTGC
CCATCCCAGGCCCCGTGGAGGAGATGCTGGCTGAGGTCAACGCCACCATCACGGACATCATCTCAGCCCT
GGTCACCAGCACGTTCATCATCGAGAAGCAGCCTCCTCAGGTCCTGAAGACCCAGACCAAGTTTGCAGCC
ACCGTGCGCCTGCTGGTGGGGGGGAAGCTGAATGTGCACATGAACCCCCCGCAGGTGAAGGCGACCATCA
TCAGCGAGCAGCAGGCCAAGTCCCTGCTCAAGAATGAGAACACCCGCAATGATTACAGCGGCGAGATCCT
GAACAACTGTTGCGTCATGGAGTACCACCAGGCCACTGGCACACTCAGCGCCCACTTCAGAAACATGTCC
CTGAAACGAATCAAGAGGTCTGACCGCCGTGGGGCAGAGTCAGTAACGGAAGAGAAGTTCACGATCCTGT
TTGACTCACAGTTCAGCGTCGGTGGAAACGAGCTGGTCTTTCAAGTCAAGACCTTGTCGCTCCCGGTGGT
GGTGATTGTTCACGGCAGCCAGGACAACAATGCCACAGCCACTGTCCTCTGGGACAACGCCTTTGCAGAG
CCTGGCAGGGTGCCATTTGCCGTGCCTGACAAGGTGCTGTGGCCGCAGCTGTGTGAAGCGCTCAACATGA
AATTCAAGGCTGAAGTACAGAGCAACCGGGGCTTGACCAAGGAGAACCTCGTGTTCCTGGCACAGAAACT
GTTCAACATCAGCAGCAACCACCTCGAGGACTACAACAGCATGTCCGTGTCCTGGTCCCAGTTCAACCGG
GAGAATTTGCCAGGACGGAATTACACTTTCTGGCAGTGGTTTGATGGCGTGATGGAAGTATTGAAAAAAC
ATCTCAAGCCTCACTGGAATGATGGGGCTATCCTGGGTTTCGTGAACAAGCAACAGGCCCACGACCTGCT
CATCAACAAGCCAGACGGGACCTTCCTGCTGCGCTTCAGCGACTCGGAAATCGGGGGCATCACCATTGCT
TGGAAGTTTGACTCTCAGGAGAGAATGTTTTGGAATCTGATGCCTTTTACCACTAGAGACTTCTCTATCC
GGTCCCTCGCTGACCGCCTGGGGGACCTGAATTACCTCATATATGTGTTTCCTGATCGGCCAAAGGATGA
AGTATATTCTAAGTACTACACACCGGTCCCCTGTGAGCCCGCAACTGCGAAAGCAGCTGACGGATACGTG
AAGCCACAGATCAAGCAGGTGGTCCCCGAGTTTGCAAATGCATCCACAGATGCTGGGAGTGGCGCCACCT
ACATGGATCAGGCTCCTTCCCCAGTCGTGTGCCCTCAGGCTCACTACAACATGTACCCACCCAACCCGGA
CTCCGTCCTTGATACCGATGGGGACTTCGATCTGGAAGACACGATGGACGTGGCGCGGCGCGTGGAAGAG
CTCTTAGGCCGGCCCATGGACAGTCAGTGGATCCCTCACGCACAGTCATGA

Translation (786 aa):
MAMWIQAQQLQGDALHQMQALYGQHFPIEVRHYLSQWIESQAWDSIDLDNPQENIKATQLLEGLVQELQK
KAEHQVGEDGFLLKIKLGHYATQLQSTYDRCPMELVRCIRHILYNEQRLVREANNGSSPAGSLADAMSQK
HLQINQTFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQVS
LETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCE
KLAEIIWQNRQQIRRAEHLCQQLPIPGPVEEMLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAA
TVRLLVGGKLNVHMNPPQVKATIISEQQAKSLLKNENTRNDYSGEILNNCCVMEYHQATGTLSAHFRNMS
LKRIKRSDRRGAESVTEEKFTILFDSQFSVGGNELVFQVKTLSLPVVVIVHGSQDNNATATVLWDNAFAE
PGRVPFAVPDKVLWPQLCEALNMKFKAEVQSNRGLTKENLVFLAQKLFNISSNHLEDYNSMSVSWSQFNR
ENLPGRNYTFWQWFDGVMEVLKKHLKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIA
WKFDSQERMFWNLMPFTTRDFSIRSLADRLGDLNYLIYVFPDRPKDEVYSKYYTPVPCEPATAKAADGYV
KPQIKQVVPEFANASTDAGSGATYMDQAPSPVVCPQAHYNMYPPNPDSVLDTDGDFDLEDTMDVARRVEE
LLGRPMDSQWIPHAQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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