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Report for CCDS19940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19940.1 Public Mus musculus 6 Slc13a1 23 108 98 CCDS HistoryNCBI Gene:55961Re-query CCDS DB by CCDS ID:19940.1Re-query CCDS DB by GeneID:55961See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031713.8 ENSMUSP00000031713.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031713.8Link to Ensembl Protein Viewer:ENSMUSP00000031713.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031713Re-query CCDS DB by Protein ID:ENSMUSP00000031713
Original member Current member NCBI NM_019481.2 NP_062354.2 Accepted alive Link to Nucleotide Sequence:NM_019481.2Link to Protein Sequence:NP_062354.2Re-query CCDS DB by Nucleotide ID:NM_019481Re-query CCDS DB by Protein ID:NP_062354Link to BLAST:NP_062354.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062354.2 594 Q9JHI4-1 594 100% 0 0

Chromosomal Locations for CCDS 19940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24088965 24089102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24090772 24090909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24092227 24092388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24097580 24097689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24100246 24100352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24103413 24103514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24104014 24104109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24108144 24108263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24117925 24118076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24133512 24133560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24133641 24133698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24134330 24134517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24137049 24137185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24150710 24150838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24167966 24168064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGAAGCTCCTCAATTATGCTTTGGTCTATCGCCGCTTTCTCCTTGTGGTTTTCACTATTTTGGTTTTCT
TGCCACTCCCTCTCATCATCCGCACCAAGGAAGCACAATGTGCCTACATCCTCTTTGTTATTGCCATATT
TTGGATCACAGAAGCCTTGCCCCTGTCAATCACAGCTCTACTGCCTGGGTTAATGTTCCCCATGTTTGGG
ATCATGCGTTCTTCACAGGTGGCTTCTGCTTATTTCAAAGACTTTCACCTTCTGCTAATTGGAGTCATCT
GTTTAGCAACATCAATAGAAAAATGGAATTTGCACAAGAGGATCGCTCTGAGGATGGTGATGATGGTGGG
GGTGAATCCAGCCTGGCTGACGTTGGGGTTCATGAGCAGCACTGCCTTCTTATCTATGTGGCTTAGCAAC
ACCTCTACTGCTGCCATGGTGATGCCCATCGTGGAGGCTGTGGCGCAGCAGATCATCAGTGCTGAAGCAG
AGGCCGAGGCCACTCAGATGACTTATTTCAATGAATCTGCCGCCCACGGACTGGACATTGATGAAACTGT
TATTGGACAAGAAACAAATGAGAAAAAAGAGAAAACAAAACCAGCTCCAGGAAGCAGTCATGACAAAGGG
AAAGTGTCAAGAAAGATGGAGACAGAAAAGAATGCAGTCACAGGAGCAAAATATCGGTCAAGGAAGGACC
ACATGATGTGTAAGCTCATGTGTTTATCTGTTGCTTACTCTTCAACCATTGGTGGGCTGACAACAATCAC
GGGTACCTCCACCAACCTGATCTTCTCTGAGCATTTCAATACGCGCTACCCTGATTGTCGCTGCCTCAAC
TTTGGTTCCTGGTTTTTGTTTTCCTTCCCGGTTGCTCTAATTCTTCTACTTTTGTCTTGGATTTGGCTCC
AGTGGCTCTACCTAGGATTCGACTTTAAGATGTTCAAGTGTGGCAAAACCAAAACACTCAAAGAAAAAGC
TTGTGCAAAGGTGATCAAACAAGAATATGAAAAACTTGGGCCAATGAGGTATCAAGAAATCGTGACCTTG
GTGATCTTCATTGTAATGGCCTTGCTCTGGTTCAGTCGGGACCCAGGCTTTGTCACTGGTTGGTCGGTCC
TGTTTTCAGAGTACCCGGGTTATGTTACAGATTCAACGGTTGCTTTAGTAGCAGGAATCCTTTTCTTTCT
AATTCCAGCTAAGAAAGTGACAAAAATGACATCTGCAGGAGAAATTATTGCTTTTGATTACACTCCTCTG
ATTACTTGGAAAGAATTCCAGTCATTCATGCCCTGGGACATAGCCATTCTTGTTGGTGGAGGCTTTGCCC
TGGCAGATGGCTGTCAGGTATCAGGACTATCTAACTGGATAGGGAGTAAATTATCTCCTCTAGGTTCATT
ACCAGTTTGGCTAATAATTCTGATATCTTCCTTGATTGTCACATCTTTGACAGAGGTAGCCAGCAACCCA
GCTACCATTACCATTCTGTTCCCAATATTATCTCCTTTGGCTGAAGCCATTCAAGTGAACCCTCTTCAGA
TTTTGCTGCCTTCCACTCTCTGTACCTCATTTGCATTTCTTCTGCCAGTTGCAAATCCACCCAATGCTAT
TGTTTTTTCCTATGGCCACCTGAAAGTCATTGACATGGTTAAAGCTGGACTTGGAGTGAATATTTTGGGT
GTTGCTGTGGTGATGCTAGGCATGTTCACCTGGATCGAGCCGATGTTTAACCTCCACGAGTATCCCTCCT
GGGCTTCTAACTTTGTTAATCAGACCATGCCATGA

Translation (594 aa):
MKLLNYALVYRRFLLVVFTILVFLPLPLIIRTKEAQCAYILFVIAIFWITEALPLSITALLPGLMFPMFG
IMRSSQVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMVGVNPAWLTLGFMSSTAFLSMWLSN
TSTAAMVMPIVEAVAQQIISAEAEAEATQMTYFNESAAHGLDIDETVIGQETNEKKEKTKPAPGSSHDKG
KVSRKMETEKNAVTGAKYRSRKDHMMCKLMCLSVAYSSTIGGLTTITGTSTNLIFSEHFNTRYPDCRCLN
FGSWFLFSFPVALILLLLSWIWLQWLYLGFDFKMFKCGKTKTLKEKACAKVIKQEYEKLGPMRYQEIVTL
VIFIVMALLWFSRDPGFVTGWSVLFSEYPGYVTDSTVALVAGILFFLIPAKKVTKMTSAGEIIAFDYTPL
ITWKEFQSFMPWDIAILVGGGFALADGCQVSGLSNWIGSKLSPLGSLPVWLIILISSLIVTSLTEVASNP
ATITILFPILSPLAEAIQVNPLQILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNILG
VAVVMLGMFTWIEPMFNLHEYPSWASNFVNQTMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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