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Report for CCDS23828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23828.1 Public Mus musculus 10 Popdc1 23 108 98 CCDS HistoryNCBI Gene:23828Re-query CCDS DB by CCDS ID:23828.1Re-query CCDS DB by GeneID:23828See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095715.4 ENSMUSP00000093382.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095715.4Link to Ensembl Protein Viewer:ENSMUSP00000093382.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095715Re-query CCDS DB by Protein ID:ENSMUSP00000093382
Original member Current member NCBI NM_024285.3 NP_077247.1 Accepted alive Link to Nucleotide Sequence:NM_024285.3Link to Protein Sequence:NP_077247.1Re-query CCDS DB by Nucleotide ID:NM_024285Re-query CCDS DB by Protein ID:NP_077247Link to BLAST:NP_077247.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077247.1 358 Q9ES83 358 100% 0 0

Chromosomal Locations for CCDS 23828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 45339231 45339456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45343034 45343158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45346127 45346314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45347785 45347893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45353750 45353917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45354751 45354892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45369191 45369309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGAATTCCACGGAGTCCATCCCGCTGGCACAGTCAACTGTAGCAGGTTTTACATCTGAGTTAGAAAGTC
TCACACCCGTGCCTTCTAATGAGACCACTTGTGAGAACTGGCGAGAGATTCACCATCTGGTTTTTCATGT
AGCAAACGTTTGCTTTGCAGTTGGTTTGCTAATTCCCACCACTCTTCACCTCCATATGATACTGCTCAGA
GTGATGTTGTCTCTAGGATGTACCCTTTATGTGGTCTGGGCCACTCTCTACCGCTGTGCCTTGGATGTGA
TGATCTGGAACTCGGTGTTCTTGGGTATCAATATTTTGCATCTTTCATATCTTTTGTACAAGAAAAGACC
GGTCAAAATTGAAAAGGAGCTGGGTGGTGTCTACCATCGGTTGTTTGAACCACTCCGAGTCCCTCCGGAT
TTGTTTAGAAGGTTAACCGGACAGTTTTGTATGATCCAGACCTTGAAAAGGGGCCAGGTTTACGCCACAG
AGGACAAAACCTCAGTTGATGATCGTCTTAGTATTCTCCTAAAAGGAAGAATGAAGGTCTCCTATCGAGG
ACATTTTCTGCATAACATTTACCCGTGTGCCTTTATAGATTCTCCCGAATTCAGATCAACGCAGATGCAC
AAAGGCGAAAAATTCCAGGTCACCATTGTTGCAGATGATAACTGCAGGTTCTTATGCTGGTCAAGAGAAA
GACTGACTTACTTTCTGGAGTCAGAGCCTTTTCTGTATGAAATTTTTAGGTACCTTATAGGAAAAGACAT
TACAAATAAGCTGTACTCACTGAATGACCCTACTTTAAATGATAAGAAAGTTAAGAAGCTGGAGCCCCAG
ATGAGCCTCTGCACACAGATCTCCATGCTGGAGATGAGGAACAGTATCACCAGCTCCAGCGACGGCGAGG
ACGGCCTGCACCACTTTCTGCGGGGCTCCTCCAGCACGGCGTCTCTCCCCATGTCCTCCCCGCAGCAGCG
AGCCTCTGCCAAGATGAAGCCAATCGAGGAAGGGGTAGAAGATGACGATGAGGTCTTTGTGTCTCCAGAC
GCACTCAAAGTCCATCAGTTGCCTTGA

Translation (358 aa):
MNSTESIPLAQSTVAGFTSELESLTPVPSNETTCENWREIHHLVFHVANVCFAVGLLIPTTLHLHMILLR
VMLSLGCTLYVVWATLYRCALDVMIWNSVFLGINILHLSYLLYKKRPVKIEKELGGVYHRLFEPLRVPPD
LFRRLTGQFCMIQTLKRGQVYATEDKTSVDDRLSILLKGRMKVSYRGHFLHNIYPCAFIDSPEFRSTQMH
KGEKFQVTIVADDNCRFLCWSRERLTYFLESEPFLYEIFRYLIGKDITNKLYSLNDPTLNDKKVKKLEPQ
MSLCTQISMLEMRNSITSSSDGEDGLHHFLRGSSSTASLPMSSPQQRASAKMKPIEEGVEDDDEVFVSPD
ALKVHQLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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