NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45742.1 Public Homo sapiens 17 TSPOAP1 24 110 108 CCDS HistoryNCBI Gene:9256Re-query CCDS DB by CCDS ID:45742.1Re-query CCDS DB by GeneID:9256See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45742.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268893.10 ENSP00000268893.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000268893.10Link to Ensembl Protein Viewer:ENSP00000268893.6Re-query CCDS DB by Nucleotide ID:ENST00000268893Re-query CCDS DB by Protein ID:ENSP00000268893
Original member Current member NCBI NM_024418.3 NP_077729.1 Accepted alive Link to Nucleotide Sequence:NM_024418.3Link to Protein Sequence:NP_077729.1Re-query CCDS DB by Nucleotide ID:NM_024418Re-query CCDS DB by Protein ID:NP_077729Link to BLAST:NP_077729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077729.1 1797 O95153-2 1797 100% 0 0

Chromosomal Locations for CCDS 45742.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 58304370 58304399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58305061 58305171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58305387 58305458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58305540 58305643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58305833 58305865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58306342 58306413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58306800 58306968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58307611 58307762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58307842 58307941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58308541 58309380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58309967 58310158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58310512 58310751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58310836 58311213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58311571 58311722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58311892 58312722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58316023 58316132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58316425 58316540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58318280 58318452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58319090 58319294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58320109 58320129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58320531 58320581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58322308 58322412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58322654 58322776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58322950 58323039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58323298 58323381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58323468 58323545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58324811 58325002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58326293 58326421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58326683 58326790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58327588 58327920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5394 nt):
ATGGAGCAACTGACAACCCTCCCACGGCCTGGGGACCCTGGAGCCATGGAGCCATGGGCACTGCCCACCT
GGCATAGCTGGACTCCAGGTCGAGGGGGTGAACCTAGCAGTGCAGCCCCAAGCATCGCTGATACTCCTCC
GGCAGCTCTGCAGCTTCAAGAACTGAGGTCTGAGGAGAGTTCCAAGCCCAAAGGAGACGGGAGCTCCAGG
CCCGTGGGGGGAACTGACCCTGAAGGAGCAGAGGCTTGTCTGCCCAGCCTGGGCCAGCAAGCATCCAGCT
CTGGACCCGCCTGCCAGAGGCCAGAGGATGAGGAAGTGGAGGCTTTCCTGAAGGCCAAGCTGAATATGAG
CTTTGGGGACAGGCCCAATCTGGAGCTGCTGAGGGCCCTGGGGGAGCTGCGGCAGCGCTGTGCCATCCTT
AAGGAGGAAAACCAGATGCTGAGGAAGAGCAGCTTCCCTGAGACAGAAGAGAAGGTGCGGAGGCTGAAGA
GGAAGAACGCCGAGCTGGCGGTCATTGCCAAGCGCCTGGAGGAGAGGGCCCGAAAGCTGCAGGAAACGAA
CCTGAGGGTGGAGGGTCCCCAGTGGCTCCACGTGCGGGACTTCGATCGGCTGCTGCGCGAGTCCCAGCGG
GAGGTGCTGCGGCTGCAGAGGCAGATCGCGCTGCGCAACCAGCGGGAGACGCTCCCGCTCCCGCCGTCCT
GGCCCCCGGGCCCTGCTCTCCAGGCCAGAGCAGGGGCGCCTGCTCCCGGGGCCCCGGGAGAGGCCACGCC
CCAGGAGGATGCGGACAACCTACCCGTGATTCTAGGGGAGCCAGAGAAAGAGCAGAGGGTGCAGCAGCTG
GAATCGGAGCTCAGCAAGAAGCGGAAGAAATGCGAGAGCCTGGAGCAGGAAGCCCGGAAAAAGCAGAGGC
GATGTGAGGAGCTGGAACTGCAGCTGAGACAAGCGCAGAATGAGAATGCCCGCCTGGTGGAGGAGAACTC
CCGGCTCAGTGGGAGAGCCACAGAGAAGGAGCAGGTGGAGTGGGAGAATGCGGAGCTGAGGGGCCAGCTC
CTGGGGGTGACACAGGAGAGGGACTCAGCCCTTCGCAAGAGCCAGGGCCTGCAGAGCAAGCTGGAGAGCC
TGGAGCAAGTGCTGAAGCACATGCGGGAGGTGGCCCAGCGGCGGCAGCAGCTGGAGGTGGAGCATGAACA
GGCTCGGCTCAGCCTACGGGAGAAGCAGGAGGAGGTCCGGAGACTGCAGCAGGCCCAGGCTGAAGCCCAG
AGGGAACATGAAGGAGCCGTGCAGCTGCTGGAGTCTACCTTGGATTCCATGCAGGCCCGGGTTCGAGAGC
TCGAAGAACAGTGCCGCAGCCAAACCGAGCAGTTCAGCCTCCTGGCACAGGAACTCCAGGCTTTCCGCCT
GCACCCGGGCCCCTTGGATCTGCTCACATCTGCCCTGGACTGTGGGAGCCTTGGAGACTGCCCACCACCC
CCCTGCTGCTGCTCCATTCCCCAGCCTTGCCGGGGGTCTGGCCCCAAAGACCTTGACCTCCCGCCGGGCT
CCCCTGGGCGCTGCACCCCAAAGTCTTCCGAGCCTGCCCCTGCCACTCTCACTGGGGTCCCTCGAAGGAC
AGCCAAGAAGGCAGAGTCTCTCTCCAACTCCTCCCACTCCGAGTCCATCCACAACAGCCCCAAGTCATGC
CCTACACCTGAGGTGGACACAGCCAGTGAGGTAGAGGAGCTGGAGGCAGACAGTGTCTCCCTGCTCCCAG
CTGCGCCAGAGGGCAGCCGGGGAGGAGCCAGGATCCAGGTCTTCCTAGCACGTTATAGCTACAACCCCTT
TGAGGGTCCCAATGAGAATCCAGAAGCAGAGCTTCCGCTGACAGCTGGCGAGTACATCTACATCTATGGC
AACATGGATGAGGATGGCTTTTTTGAAGGAGAGCTCATGGATGGCCGAAGGGGCCTGGTCCCTTCCAATT
TTGTAGAGCGTGTGTCGGATGATGACCTCCTGACCTCCCTCCCTCCAGAGCTGGCCGATTTGTCCCACAG
CTCAGGCCCTGAACTCAGTTTCCTGAGTGTAGGTGGGGGTGGCAGCAGTAGCGGGGGCCAAAGCAGTGTG
GGAAGGAGCCAGCCCAGACCTGAGGAGGAGGATGCAGGGGACGAGCTCAGTCTGAGCCCATCACCGGAGG
GCCTGGGCGAGCCTCCTGCCGTGCCTTACCCCCGCCGTCTGGTGGTCCTCAAGCAGCTGGCCCACAGCGT
GGTGCTGGCCTGGGAGCCGCCTCCTGAGCAAGTGGAGCTACACGGCTTCCATATCTGTGTGAATGGGGAG
CTGCGACAGGCCCTGGGGCCTGGGGCGCCACCCAAGGCCGTGCTGGAGAACCTGGACCTGTGGGCCGGGC
CCCTTCACATTTCTGTCCAGGCCCTGACTAGCCGGGGCAGCTCTGACCCACTGCGCTGTTGCTTGGCGGT
GGGTGCCCGGGCCGGAGTGGTGCCCAGCCAGCTGCGGGTCCATCGGTTGACAGCCACATCTGCTGAGATC
ACCTGGGTGCCCGGCAATAGCAACTTGGCCCATGCCATCTACCTCAATGGGGAAGAGTGCCCACCTGCCA
GCCCCAGTACCTACTGGGCCACCTTCTGCCACTTACGGCCTGGCACACCCTATCAGGCCCAAGTGGAGGC
TCAGCTCCCACCCCAAGGGCCCTGGGAACCAGGCTGGGAGAGGCTGGAGCAGCGGGCTGCCACCCTGCAG
TTCACCACACTCCCAGCAGGCCCACCTGATGCCCCTCTGGATGTGCAGATCGAGCCTGGGCCCTCCCCTG
GGATCTTGATCATCAGTTGGCTCCCAGTCACCATCGATGCTGCTGGCACATCCAACGGTGTCCGGGTCAC
AGGCTATGCCATCTACGCTGATGGGCAGAAGATCATGGAGGTGGCCTCACCCACGGCAGGCAGTGTACTG
GTGGAGTTGTCCCAGCTGCAGCTGCTGCAGGTGTGTCGTGAGGTGGTCGTGCGCACCATGTCGCCCCACG
GGGAGTCGGCGGACTCCATCCCGGCTCCTATCACTCCCGCCCTGGCTCCGGCCAGCCTGCCAGCCCGAGT
CTCCTGCCCCTCACCGCACCCAAGCCCAGAGGCCAGAGCGCCCCTTGCTTCAGCCTCCCCAGGGCCTGGA
GACCCCAGCTCTCCTCTCCAGCACCCTGCTCCCCTTGGAACTCAAGAGCCTCCAGGAGCACCCCCTGCAA
GCCCTTCCAGAGAGATGGCAAAAGGGTCCCACGAGGACCCTCCAGCACCTTGCTCCCAGGAGGAGGCTGG
GGCAGCAGTGCTGGGCACCTCAGAGGAGAGGACAGCCAGCACATCTACCCTGGGTGAGAAGGACCCTGGC
CCCGCAGCTCCCTCACTGGCCAAGCAGGAGGCCGAGTGGACTGCAGGAGAGGCCTGTCCGGCCTCCAGCT
CCACCCAGGGAGCACGGGCCCAGCAGGCGCCAAATACCGAGATGTGCCAAGGAGGAGACCCAGGGTCTGG
GCTGAGGCCCAGGGCTGAGAAGGAGGACACAGCAGAGCTTGGGGTTCATCTGGTGAACTCCCTCGTGGAC
CACGGCCGCAACTCAGACCTGTCAGACATCCAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGG
AGCTGGGTTCCAGGACTTGCTCCTTCCAGAAGCAGGTTGCTGGCAACAGCATCAGGGAGAATGGGGCCAA
GTCCCAGCCCGACCCCTTTTGTGAGACTGACAGCGATGAGGAGATCTTGGAGCAGATCCTGGAGCTGCCC
CTCCAGCAGTTCTGTAGCAAGAAGCTCTTTAGCATCCCGGAGGAGGAGGAAGAGGAAGAGGAGGACGAGG
AGGAGGAGAAGTCAGGGGCAGGCTGTTCTTCCCGAGACCCTGGCCCGCCTGAACCTGCATTGCTGGGGCT
GGGCTGTGACAGTGGTCAGCCCCGAAGACCTGGCCAGTGTCCCTTGTCTCCTGAGTCCTCCAGGGCTGGA
GACTGCCTGGAAGACATGCCTGGATTAGTTGGTGGAAGCAGCCGGAGGAGAGGAGGGGGCTCCCCTGAGA
AGCCCCCAAGCCGCAGGCGGCCTCCAGATCCCCGAGAACACTGCAGCCGACTTCTCAGCAACAATGGGCC
CCAGGCCTCTGGACGACTGGGCCCCACACGGGAGAGGGGTGGCCTCCCCGTAATTGAGGGCCCCAGGACT
GGACTAGAGGCTAGCGGGAGAGGCCGGCTGGGCCCTTCCCGGAGGTGCTCCCGTGGCCGGGCGCTGGAGC
CTGGCCTGGCCAGCTGCCTTTCCCCCAAGTGCTTGGAAATCAGCATTGAATATGATTCGGAGGATGAGCA
GGAGGCGGGCAGCGGGGGCATCAGCATCACCAGCTCCTGCTACCCTGGAGATGGGGAGGCCTGGGGCACA
GCAACTGTAGGAAGGCCCAGGGGGCCTCCGAAGGCCAATTCAGGCCCCAAGCCCTACCCACGCCTCCCAG
CCTGGGAGAAAGGGGAACCAGAGCGGAGAGGCCGCAGTGCGACGGGCAGAGCCAAGGAGCCACTCTCCCG
GGCAACAGAGACCGGAGAGGCCAGAGGGCAGGACGGCTCTGGGCGGAGGGGCCCCCAGAAGAGAGGTGTC
CGAGTCCTCAGGCCAAGCACTGCAGAGCTAGTCCCTGCGAGGAGCCCCTCAGAAACACTGGCTTACCAGC
ACCTACCCGTCAGGATCTTTGTGGCTCTGTTTGACTATGACCCCGTGTCAATGTCGCCCAATCCTGATGC
TGGAGAAGAAGAGCTTCCCTTCCGAGAGGGTCAGATCCTGAAGGTGTTTGGGGACAAGGATGCCGATGGC
TTCTACCAGGGCGAAGGTGGGGGCCGGACAGGCTACATTCCCTGCAACATGGTGGCTGAGGTGGCTGTGG
ACAGCCCTGCTGGGAGACAGCAACTGCTCCAGCGGGGTTATTTGTCCCCAGATATTCTCCTTGAGGGCTC
AGGGAATGGTCCGTTTGTGTACTCCACAGCCCACACAACTGGGCCTCCTCCCAAGCCCCGCCGCTCCAAG
AAAGCTGAGTCGGAAGGCCCTGCCCAGCCCTGTCCAGGCCCCCCTAAGCTGGTCCCCTCTGCTGACCTGA
AAGCTCCCCACTCCATGGTGGCTGCATTTGACTACAACCCCCAGGAGAGTTCCCCCAATATGGACGTGGA
GGCAGAGCTGCCCTTCCGGGCAGGGGATGTCATTACTGTGTTTGGGGGCATGGACGATGACGGTTTCTAC
TATGGGGAATTAAATGGACAAAGGGGCCTGGTTCCATCCAACTTCCTGGAGGGCCCTGGGCCTGAGGCAG
GCGGCCTGGACAGGGAACCCAGGACACCCCAGGCTGAGAGTCAGAGAACGAGGAGGAGAAGAGTCCAGTG
CTAG

Translation (1797 aa):
MEQLTTLPRPGDPGAMEPWALPTWHSWTPGRGGEPSSAAPSIADTPPAALQLQELRSEESSKPKGDGSSR
PVGGTDPEGAEACLPSLGQQASSSGPACQRPEDEEVEAFLKAKLNMSFGDRPNLELLRALGELRQRCAIL
KEENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERARKLQETNLRVEGPQWLHVRDFDRLLRESQR
EVLRLQRQIALRNQRETLPLPPSWPPGPALQARAGAPAPGAPGEATPQEDADNLPVILGEPEKEQRVQQL
ESELSKKRKKCESLEQEARKKQRRCEELELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELRGQL
LGVTQERDSALRKSQGLQSKLESLEQVLKHMREVAQRRQQLEVEHEQARLSLREKQEEVRRLQQAQAEAQ
REHEGAVQLLESTLDSMQARVRELEEQCRSQTEQFSLLAQELQAFRLHPGPLDLLTSALDCGSLGDCPPP
PCCCSIPQPCRGSGPKDLDLPPGSPGRCTPKSSEPAPATLTGVPRRTAKKAESLSNSSHSESIHNSPKSC
PTPEVDTASEVEELEADSVSLLPAAPEGSRGGARIQVFLARYSYNPFEGPNENPEAELPLTAGEYIYIYG
NMDEDGFFEGELMDGRRGLVPSNFVERVSDDDLLTSLPPELADLSHSSGPELSFLSVGGGGSSSGGQSSV
GRSQPRPEEEDAGDELSLSPSPEGLGEPPAVPYPRRLVVLKQLAHSVVLAWEPPPEQVELHGFHICVNGE
LRQALGPGAPPKAVLENLDLWAGPLHISVQALTSRGSSDPLRCCLAVGARAGVVPSQLRVHRLTATSAEI
TWVPGNSNLAHAIYLNGEECPPASPSTYWATFCHLRPGTPYQAQVEAQLPPQGPWEPGWERLEQRAATLQ
FTTLPAGPPDAPLDVQIEPGPSPGILIISWLPVTIDAAGTSNGVRVTGYAIYADGQKIMEVASPTAGSVL
VELSQLQLLQVCREVVVRTMSPHGESADSIPAPITPALAPASLPARVSCPSPHPSPEARAPLASASPGPG
DPSSPLQHPAPLGTQEPPGAPPASPSREMAKGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLGEKDPG
PAAPSLAKQEAEWTAGEACPASSSTQGARAQQAPNTEMCQGGDPGSGLRPRAEKEDTAELGVHLVNSLVD
HGRNSDLSDIQEEEEEEEEEEEEELGSRTCSFQKQVAGNSIRENGAKSQPDPFCETDSDEEILEQILELP
LQQFCSKKLFSIPEEEEEEEEDEEEEKSGAGCSSRDPGPPEPALLGLGCDSGQPRRPGQCPLSPESSRAG
DCLEDMPGLVGGSSRRRGGGSPEKPPSRRRPPDPREHCSRLLSNNGPQASGRLGPTRERGGLPVIEGPRT
GLEASGRGRLGPSRRCSRGRALEPGLASCLSPKCLEISIEYDSEDEQEAGSGGISITSSCYPGDGEAWGT
ATVGRPRGPPKANSGPKPYPRLPAWEKGEPERRGRSATGRAKEPLSRATETGEARGQDGSGRRGPQKRGV
RVLRPSTAELVPARSPSETLAYQHLPVRIFVALFDYDPVSMSPNPDAGEEELPFREGQILKVFGDKDADG
FYQGEGGGRTGYIPCNMVAEVAVDSPAGRQQLLQRGYLSPDILLEGSGNGPFVYSTAHTTGPPPKPRRSK
KAESEGPAQPCPGPPKLVPSADLKAPHSMVAAFDYNPQESSPNMDVEAELPFRAGDVITVFGGMDDDGFY
YGELNGQRGLVPSNFLEGPGPEAGGLDREPRTPQAESQRTRRRRVQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH