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Report for CCDS18721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18721.1 Public Mus musculus 4 Taf12 23 108 98 CCDS HistoryNCBI Gene:66464Re-query CCDS DB by CCDS ID:18721.1Re-query CCDS DB by GeneID:66464See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030731.10 ENSMUSP00000030731.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030731.10Link to Ensembl Protein Viewer:ENSMUSP00000030731.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030731Re-query CCDS DB by Protein ID:ENSMUSP00000030731
Original member Current member NCBI NM_025579.3 NP_079855.2 Accepted alive Link to Nucleotide Sequence:NM_025579.3Link to Protein Sequence:NP_079855.2Re-query CCDS DB by Nucleotide ID:NM_025579Re-query CCDS DB by Protein ID:NP_079855Link to BLAST:NP_079855.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079855.2 161 Q8VE65 161 100% 0 0

Chromosomal Locations for CCDS 18721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132282878 132283045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132285044 132285121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132289315 132289429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132291863 132291951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132292627 132292662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGAACCAGTTTGGCCCTTCAGCGCTAATCAACCTCTCCAGTTTCTCATCTGTAAAACCAGAGCCAGCTA
GCACCCCGCCACAAGGCTCCATGGCCAATAGCACCACCGTGGGGAAGATAGCAGGCACTCCTGGGACAGG
TGGTCGTCTCAGCCCTGAAAACAACCAGGTATTGACCAAGAAGAAATTACAAGACCTAGTAAGAGAAGTA
GATCCTAATGAGCAGCTGGATGAAGATGTGGAAGAGATGCTGCTACAGATCGCTGATGATTTTATTGAGA
GTGTGGTGACAGCTGCCTGCCAGCTTGCTCGGCACCGCAAGTCCAGCACCCTAGAGGTAAAAGACGTCCA
GCTGCATCTAGAGCGCCAGTGGAACATGTGGATCCCAGGCTTTGGCTCTGAGGAAATCCGACCCTACAAA
AAAGCATGTACCACAGAGGCTCACAAACAGAGAATGGCACTGATCCGGAAAACAACCAAGAAATAA

Translation (161 aa):
MNQFGPSALINLSSFSSVKPEPASTPPQGSMANSTTVGKIAGTPGTGGRLSPENNQVLTKKKLQDLVREV
DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYK
KACTTEAHKQRMALIRKTTKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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