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Report for CCDS48906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48906.1 Public Mus musculus 11 Krt28 23 108 98 CCDS HistoryNCBI Gene:70843Re-query CCDS DB by CCDS ID:48906.1Re-query CCDS DB by GeneID:70843See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48906.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006963.2 ENSMUSP00000006963.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006963.2Link to Ensembl Protein Viewer:ENSMUSP00000006963.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000006963Re-query CCDS DB by Protein ID:ENSMUSP00000006963
Original member NCBI NM_027574.1 NP_081850.1 Updated not alive Link to Nucleotide Sequence:NM_027574.1Link to Protein Sequence:NP_081850.1Re-query CCDS DB by Nucleotide ID:NM_027574Re-query CCDS DB by Protein ID:NP_081850
Current member NCBI NM_027574.2 NP_081850.1 Accepted alive Link to Nucleotide Sequence:NM_027574.2Link to Protein Sequence:NP_081850.1Re-query CCDS DB by Nucleotide ID:NM_027574Re-query CCDS DB by Protein ID:NP_081850Link to BLAST:NP_081850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081850.1 462 A6BLY7 462 100% 0 0

Chromosomal Locations for CCDS 48906.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99365043 99365185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99365442 99365497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99366824 99367041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99371111 99371236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99371317 99371478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99372759 99372915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99373912 99373994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99374396 99374839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGTCTCTCCGGTTTTCTGGCGGATCCAGGCACGTTGGCATACAGTCCGGATCCCTCAGGCCGCCCAGCG
GAGGCGCAGGCTTTGCTGGGAGCAGCGTGGCTGGCGGTTCGGTTGCTGGTAGTGGATTTTCTTGGGCTTT
GGGAGGGACACTGGGCAGTGCTCCTGGTGGGAGCCATGCCACTGGTGCCCTGGGAAATGTCTCTGGTGTT
TGCTTCATCGGAAGTGAAGGGGGTCTCCTCTCTGGAAACGAGAAGGTCACCATGCAGAATCTTAACAACC
GCTTGGCCTCTTACCTGGATAACGTAAAAGCTCTGGAGGAGGCCAACTCTGAGCTAGAGAGAAAGATCAA
GACTTGGCATGAGAAATACGGACCGGGATCGTGCCGTGGACTTGACCGTGACTACAGCAAGTATCATCTA
ACCATTGAGGACCTGAAAAGCAAGATCATCTCTTCCACGGCTGCTAATGCTAATATAATTCTGCAAATTG
ATAACGCCAGACTGGCCGCAGACGATTTCCGACTAAAGTATGAAAACGAACTCACCCTTCACCAAAATGT
CGAGGCAGACATCAATGGGTTGCGGCGCGTCCTTGACGAGCTAACCCTCTGCAGAACGGACCAAGAGCTG
CAGTACGAATCCCTGAGTGAGGAGATGACTTATCTCAAGAAGAACCACGAAGAGGAAATGAAAGTCCTGC
AGTGCGCAGCTGGAGGCAACGTGAACGTGGAGATGAACGCAGCCCCAGGCGTGGACCTCACCGTCCTTCT
GAACAACATGCGAGCAGAGTACGAGGCCCTGGCTGAGCAGAACCGCAGGGACGCCGAGGCCTGGTTCCAA
GAGAAGAGCGCCACGCTGCAGCAGCAGATCTCCAATGACTTGGGCGCCGCCACCTCAGCCAGGACCGAGC
TGACAGAGCTGAAACGCTCCCTGCAGACCCTGGAGATCGAGCTGCAGTCCCTCTCAGCTACGAAACACTC
TCTGGAGTGCTCCCTGGCGGAGACCGAGGGCAACTACTGCTCACAGCTGGCTCAGATCCAGGCTCAGATC
AGCGCCCTGGAGGAGCAGCTGCACCAGGTGAGGACGGAGACCGAGGGCCAGAAGCTGGAACATGAGCAGC
TGCTGGACATCAAGGCCCACCTGGAGAAGGAGATCGAGACCTACTGCCGCCTCATAGACGGAGACGAGAA
TTCCTGCTCTGTCTCAAAGGGTTTTGAATCTGGAACCTCGGGGAATTCACCCAAAGATGTATCCAAAACC
ACACTGGTGAAGACGGTGGTTGAAGAAATAGATCAGCGTGGGAAGGTGCTGTCCTCCAGGATCCACTCCA
TCGAGGAAAAGATGTCTAAGATGAGCAACGGCAAGGCTGAGCAGAGGGTTCCCTTCTAG

Translation (462 aa):
MSLRFSGGSRHVGIQSGSLRPPSGGAGFAGSSVAGGSVAGSGFSWALGGTLGSAPGGSHATGALGNVSGV
CFIGSEGGLLSGNEKVTMQNLNNRLASYLDNVKALEEANSELERKIKTWHEKYGPGSCRGLDRDYSKYHL
TIEDLKSKIISSTAANANIILQIDNARLAADDFRLKYENELTLHQNVEADINGLRRVLDELTLCRTDQEL
QYESLSEEMTYLKKNHEEEMKVLQCAAGGNVNVEMNAAPGVDLTVLLNNMRAEYEALAEQNRRDAEAWFQ
EKSATLQQQISNDLGAATSARTELTELKRSLQTLEIELQSLSATKHSLECSLAETEGNYCSQLAQIQAQI
SALEEQLHQVRTETEGQKLEHEQLLDIKAHLEKEIETYCRLIDGDENSCSVSKGFESGTSGNSPKDVSKT
TLVKTVVEEIDQRGKVLSSRIHSIEEKMSKMSNGKAEQRVPF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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