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Report for CCDS87990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87990.1 Public Mus musculus 10 Slc16a10 23 108 98 CCDS HistoryNCBI Gene:72472Re-query CCDS DB by CCDS ID:87990.1Re-query CCDS DB by GeneID:72472See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000213488.1 ENSMUSP00000150416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213488.1Link to Ensembl Protein Viewer:ENSMUSP00000150416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213488Re-query CCDS DB by Protein ID:ENSMUSP00000150416
Original member Current member NCBI NM_028247.4 NP_082523.1 Accepted alive Link to Nucleotide Sequence:NM_028247.4Link to Protein Sequence:NP_082523.1Re-query CCDS DB by Nucleotide ID:NM_028247Re-query CCDS DB by Protein ID:NP_082523Link to BLAST:NP_082523.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082523.1 320 Q3U9N9-2 320 100% 0 0

Chromosomal Locations for CCDS 87990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 40076534 40077017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40080663 40080807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40141703 40142036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGTGCCGTCCCAGGAGGAGCCCGCCGCCGAGCGGGAGACGAACGAGGCGCAGCCGCCCGGGCCCGCGC
CCTCGGATGACGCTCCGCTGCCCGGCCCGGGACCCTCGGATGTCTCCGACGTGGCCGCAGAGAAAGTGGA
GGTGGAGCTGACGAGGTCAGCGGGCAGTGAGCCCCCCGTTCCCCCCGAGGGCGGCTGGGGCTGGTTGGTG
ATGCTGGCGGCCATGTGGTGCAACGGGTCGGTGTTTGGCATCCAGAACGCCTACGGGGTGCTCTTCGTGT
CCATGCTGGACACCTTCAAGGCCAAGGACGATGACAACATGGCCTTCAAGACAGCGTGGGTGGGCTCGCT
GTCCATGGGCATGATCTTCTTCTGCTGCCCCATCGTGAGTGTCTTCACGGACATGTTCGGCTGCCGGAGA
ACAGCTGTTGTGGGGGCAGCTGTGGGATTCATTGGACTCATGTCCAGTTCTTTTGTAAGCTCCATCGAGC
CTCTGTACCTCACCTATGGAATCATATTTGCCTGCGGCTGCTCCTTTGCCTACCAGCCGTCACTGGTCAT
TTTGGGACACTACTTCAAGAAGCGCCTTGGACTAGTCAACGGCATCGTCACGGCCGGCAGCAGCGTCTTC
ACAATCCTGCTCCCTTTGCTGTTAGGAAATCTAATCAGCAGTGTGAAGCTCTTTAACACGCTGCGGATCC
TCTGCATCTTCATGTTTGTTCTCTTTCTGGCTGGCTTTACCTACCGACCTCTTGTTCCCAGCACCAAAGA
GAAAGAGAGTGGGGGCAGCAGAAGCTCATTCTTCTCCAGGAGAAAGCTTAGTCCTCCAAAAAAAGTCTTT
AACTTTGCCCTCTTCAAGGAGACAACCTATGCAGTGTGGGCTGCTGGGATACCACTTGCACTTTTTGGCT
ACTTTGTGCCTTACGTTCACTTGGTAAGTATGCATCTTTGGCTCTGTTTGTAA

Translation (320 aa):
MVPSQEEPAAERETNEAQPPGPAPSDDAPLPGPGPSDVSDVAAEKVEVELTRSAGSEPPVPPEGGWGWLV
MLAAMWCNGSVFGIQNAYGVLFVSMLDTFKAKDDDNMAFKTAWVGSLSMGMIFFCCPIVSVFTDMFGCRR
TAVVGAAVGFIGLMSSSFVSSIEPLYLTYGIIFACGCSFAYQPSLVILGHYFKKRLGLVNGIVTAGSSVF
TILLPLLLGNLISSVKLFNTLRILCIFMFVLFLAGFTYRPLVPSTKEKESGGSRSSFFSRRKLSPPKKVF
NFALFKETTYAVWAAGIPLALFGYFVPYVHLVSMHLWLCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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