NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38533.1 Public Mus musculus 3 Them4 23 108 98 CCDS HistoryNCBI Gene:75778Re-query CCDS DB by CCDS ID:38533.1Re-query CCDS DB by GeneID:75778See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38533.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049822.9 ENSMUSP00000062841.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049822.9Link to Ensembl Protein Viewer:ENSMUSP00000062841.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049822Re-query CCDS DB by Protein ID:ENSMUSP00000062841
Original member NCBI NM_029431.1 NP_083707.1 Updated not alive Link to Nucleotide Sequence:NM_029431.1Link to Protein Sequence:NP_083707.1Re-query CCDS DB by Nucleotide ID:NM_029431Re-query CCDS DB by Protein ID:NP_083707
Current member NCBI NM_029431.2 NP_083707.1 Accepted alive Link to Nucleotide Sequence:NM_029431.2Link to Protein Sequence:NP_083707.1Re-query CCDS DB by Nucleotide ID:NM_029431Re-query CCDS DB by Protein ID:NP_083707Link to BLAST:NP_083707.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083707.1 230 Q3UUI3 230 100% 0 0

Chromosomal Locations for CCDS 38533.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94310217 94310288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94317390 94317576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94323582 94323741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94324277 94324384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94329762 94329886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94331540 94331580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGCTGAGAAACTGCGCTATGCGCCTGCGCACTCTTGGGGCCACGCCTGCGAGGCGGCCAGGAGCAGCTA
GGAGGTTATTTTCTTCTGAGAAAGTCATTCGTAAGGACTATGCTCTCCCTAACCCCAGCTGGACTAAGGA
CCTCAGACTCCTTTTTGATCAGTTCATGAAGAAATGTGAAGATGGCTCCTGGAAACGCATGCCTTCACAC
AGACAAAACCCTACTCGAGCTATTCAAGAGTTCCAAACCCTTTTTGTTGACTCGAAGTTTAAGAAAGAAG
AACAAATGTCAAAGGCCCAACAGTTCACCAGAAGTTTCGAGGAAGGGCTAGGCTTTGAGTATGCGATGTT
CTATAATAAAGTTGAGAAGAGGACGGTCTCCTTGTTTCAAGGAGGACTTCACCTGCAAGGAGTACCTGGA
TTTGTTCACGGAGGTGCCATTGCAACCATCATTGATGTCACTACTGGCACGTGTGCAATTTCCGAAGGCG
TTGCCATGACTGCCAACCTCAACATCACCTATAAAAAGCCTATCCCCCTTCTTTCTGTTGTTGTGGTAAA
TAGCCAACTTCAAAAAATTGAAGGAAGGAAACTTTTTGTTTCCTGTACTATTCAAAGTATTGATGAGAAG
ACTTTATACACAGAGGCAACGGCCTTATTTATAAAGCTGGATCCTGAGAAACCTTTGACATAA

Translation (230 aa):
MLRNCAMRLRTLGATPARRPGAARRLFSSEKVIRKDYALPNPSWTKDLRLLFDQFMKKCEDGSWKRMPSH
RQNPTRAIQEFQTLFVDSKFKKEEQMSKAQQFTRSFEEGLGFEYAMFYNKVEKRTVSLFQGGLHLQGVPG
FVHGGAIATIIDVTTGTCAISEGVAMTANLNITYKKPIPLLSVVVVNSQLQKIEGRKLFVSCTIQSIDEK
TLYTEATALFIKLDPEKPLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH