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Report for CCDS38414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38414.1 Public Mus musculus 3 Atp11b 23 108 98 CCDS HistoryNCBI Gene:76295Re-query CCDS DB by CCDS ID:38414.1Re-query CCDS DB by GeneID:76295See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029257.14 ENSMUSP00000029257.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029257.14Link to Ensembl Protein Viewer:ENSMUSP00000029257.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029257Re-query CCDS DB by Protein ID:ENSMUSP00000029257
Original member Current member NCBI NM_029570.4 NP_083846.2 Accepted alive Link to Nucleotide Sequence:NM_029570.4Link to Protein Sequence:NP_083846.2Re-query CCDS DB by Nucleotide ID:NM_029570Re-query CCDS DB by Protein ID:NP_083846Link to BLAST:NP_083846.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083846.2 1175 Q6DFW5 1175 100% 0 0

Chromosomal Locations for CCDS 38414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 35754384 35754410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35778025 35778141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35782512 35782601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35784507 35784587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35788087 35788194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35788426 35788554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35789558 35789661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35795759 35795806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35798594 35798658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35800484 35800565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35805734 35805884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35806768 35806965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35809357 35809596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35810121 35810296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35810646 35810714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35812063 35812136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35812213 35812316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35814044 35814225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35819909 35820112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35826945 35827098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35828601 35828703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35831366 35831511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35832921 35832980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35834295 35834422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35835239 35835377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35836959 35837024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35837486 35837589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35839049 35839214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35849434 35849564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35855105 35855186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3528 nt):
ATGTGGCGCTGGGTCCGGCAGCAGCTGGGTTTTGACCCACCACATCAAAGTGACACAAGAACTATTTACA
TAGCCAACAGGTTTCCTCAGAATGGCCTTTACACACCTCAGAAATTTATAGATAACCGGATCATTTCATC
TAAGTATACTATATGGAATTTTGTTCCAAAAAATTTATTTGAACAGTTCAGAAGAGTGGCAAACTTTTAT
TTTCTTATTATATTTTTGGTTCAGCTTATGATTGATACACCTACCAGTCCAATTACCAGTGGACTTCCAT
TATTCTTTGTGATAACAGTAACTGCCATAAAACAGGGTTATGAAGACTGGTTACGCCATAACTCAGATAA
TGAAGTAAACGGAGCTCCTGTCTATGTTGTCAGAAGTGGGGGGCTTGTAAAAACTCGATCCAAAAACATT
CGGGTGGGTGATATTGTTCGTATAGCCAAAGATGAAATTTTTCCTGCAGATTTGGTGCTTCTGTCCTCAG
ATCGACTTGATGGTTCATGTCATGTGACAACTGCTAGTTTGGATGGAGAGACAAACCTAAAGACACATGT
GTCAGTTCCAGAAACAGCAGTATTACAAACAGTTGCCAACTTGGACAGTCTCATAGCTGTAATAGAATGC
CAACAGCCAGAAGCAGATTTATACAGATTTATGGGACGAATGATAATAACTCAACAAATGGAAGAAATTG
TAAGACCTCTGGGACCAGAGAGTCTCTTGCTTCGTGGAGCCAGATTAAAAAATACAAAAGAAATTTTTGG
TGTGGCTGTATACACTGGAATGGAAACTAAGATGGCACTAAATTACAAGAGCAAGTCACAGAAAAGATCT
GCAGTAGAAAAATCAATGAACACATTTTTAATAATTTACCTAATAATACTTATTTCTGAGGCCATCATCA
GTACGATCTTGAAATATACCTGGCAAGCTGAAGAAAAATGGGATGAACCTTGGTATAACCAAAAAACAGA
ACATCAAAGAAACAGTAGTAAGATTCTGAGATTTATTTCTGACTTCCTTGCTTTTTTGGTACTCTACAAT
TTCATCATTCCAATTTCTCTGTATGTGACAGTTGAGATGCAGAAATTTCTTGGATCATTTTTTATTGGCT
GGGATCTTGATCTGTATCACGAAGAGTCAGATCAGAAAGCTCAAGTCAATACTTCTGATCTGAATGAAGA
GCTTGGGCAGGTGGAATATGTATTTACAGATAAAACTGGAACACTGACAGAAAATGAGATGCAGTTTCGA
GAATGTTCAATTAATGGCCTGAAATACCAAGAAATCAATGGTAAACTTGTACCTGAAGGACCAAGCCCAG
ACTCCACAGAAGGAGAAGTGCCTTTCCTTGGTAGTTTATCCCATCTCAGCAACTCAGCCCATCTCACAGC
CACTTCTCTTAGAACCAGTCCTGAAAGTGAAACTGAGCTAATCAAAGAACACGATCTGTTCTTTAAAGCA
GTCAGTCTTTGCCATACTGTACAGATCAGCAATGTTCAAACTGACGGCATCGGGGATGGTCCCTGGCAGC
CCAACCTGGCACCTGCACAGCTGGAGTACTATGCATCTTCACCAGATGAAAAGGCTCTGGTGGAAGCTGC
GGCAAGAGCTGGTATTATATTTGTAGGCATTTCTGAAGAAACTATGGAGGTTAAAGTACTTGGGAGATTG
GAAAGGTACAAATTGCTTCATATTCTGGAATTTGATTCAGATCGTAGGAGAATGAGTGTAATTGTTCAGG
CACCTTCAGGTGAGAAGCTTTTATTTGCTAAAGGAGCAGAATCTTCAATTCTCCCTAAATGTATAGGTGG
AGAAATAGCAAAAACCAGAATTCATGTTGATGAGTTTGCTTTGAAAGGACTGCGGACACTGTGTATAGCT
TACAGACAGTTTACAGCTAAAGAGTATGAAGATGTAGACAGGCGCCTGTTTGAGGCCAGAACTGCCTTGC
AGCATCGGGAAGAGAAATTGGCTGATGCCTTCCAGTACATTGAGAAAGACCTGATATTGCTAGGAGCTAC
AGCAGTGGAAGACAGACTACAAGATAAAGTTCGAGAAACTATTGAAGCACTGAGAATGGCTGGTATTAAA
GTATGGGTACTTACTGGAGACAAACATGAAACAGCTGTTAGTGTGAGTTTATCTTGTGGACATTTTCATA
GAACTATGAATATCCTGGAACTTATCAACCAGAAGTCAGATAGTGGATGTGCTGAACAGTTGAGGCAGCT
TGCCAGAAGAATTACAGAGGACCATGTGATTCAGCATGGGCTAGTAGTAGATGGGACCAGCTTATCTCTT
GCACTCAGGGAACATGAAAAGCTCTTTATGGAAGTTTGCAGAAACTGTTCAGCTGTATTATGTTGTCGCA
TGGCACCTTTACAGAAAGCAAAAGTAATAAGACTGATAAAAATCTCTCCTGAGAAACCGATAACACTGGC
TGTTGGTGATGGTGCTAATGATGTAAGCATGATACAAGAAGCGCATGTTGGCATAGGAATCATGGGTAAA
GAGGGAAGACAAGCTGCAAGAAACAGTGACTATGCAATAGCTAGATTTAAATTTCTCTCCAAATTACTTT
TTGTTCACGGTCATTTTTATTATATTAGAATAGCTACCCTTGTACAGTATTTTTTTTATAAGAATGTGTG
CTTTATCACACCCCAGTTTTTATATCAGTTCTACTGTTTGTTTTCTCAACAAACACTGTATGACAGCGTG
TACCTGACTTTATACAATATCTGTTTTACTTCCCTACCTGTTCTCATATATAGTCTTGTGGAACAACATA
TAGACCCACACGTATTACAGAGCAAGCCTACCCTCTATCGGGACATTAGTAAAAACGGTCTCTTGAGCAT
TAAAGCATTTCTTTACTGGACCGTCCTGGGTTTCAGCCATGCCTTCATTTTCTTCTTTGGATCCTACTTT
CTAGTGGGGAAGGATACATCTTTGCTTGGAAATGGTCAGATGTTTGGAAACTGGACATTTGGTACTTTGG
TCTTCACAGTCATGGTTATTACAGTCACAGTAAAGATGGCATTGGAAACTCATTTCTGGACTTGGATCAA
CCATCTTGTTACCTGGGGATCTATTATATTTTATTTTATATTTTCTTTGTTTTATGGTGGAATTCTCTGG
CCATTTTTGGGCTCCCAGAATATGTACTTTGTATTTATTCAGCTCCTGTCAAGTGGGTCAGCTTGGTTTG
CCATACTCCTCATGGTTGTTACATGTCTATTCATTGATGTTGTGAAGAAAGTGTTTGATCGACAGCTTCA
TCCTACAAGTACAGAAAAGGCACAGCTTGCTGAAGCTCATTCCAGTGTCAAGTGCTTGGACTCCGTGTGC
TGTTTCCCAGGAGAGACCCCGTGTGCGTCTGTTGGAAGAATGCTGGAGCGAGTCATAGGACGGTGTAGTC
CCAACCATATCAGCAGGTTGTGGAATGCATCGGATCCATTCTATACCAATGACAGGAGCATCTTGACTCT
CTCGCCAATGGACTCATCTACTTGTTAA

Translation (1175 aa):
MWRWVRQQLGFDPPHQSDTRTIYIANRFPQNGLYTPQKFIDNRIISSKYTIWNFVPKNLFEQFRRVANFY
FLIIFLVQLMIDTPTSPITSGLPLFFVITVTAIKQGYEDWLRHNSDNEVNGAPVYVVRSGGLVKTRSKNI
RVGDIVRIAKDEIFPADLVLLSSDRLDGSCHVTTASLDGETNLKTHVSVPETAVLQTVANLDSLIAVIEC
QQPEADLYRFMGRMIITQQMEEIVRPLGPESLLLRGARLKNTKEIFGVAVYTGMETKMALNYKSKSQKRS
AVEKSMNTFLIIYLIILISEAIISTILKYTWQAEEKWDEPWYNQKTEHQRNSSKILRFISDFLAFLVLYN
FIIPISLYVTVEMQKFLGSFFIGWDLDLYHEESDQKAQVNTSDLNEELGQVEYVFTDKTGTLTENEMQFR
ECSINGLKYQEINGKLVPEGPSPDSTEGEVPFLGSLSHLSNSAHLTATSLRTSPESETELIKEHDLFFKA
VSLCHTVQISNVQTDGIGDGPWQPNLAPAQLEYYASSPDEKALVEAAARAGIIFVGISEETMEVKVLGRL
ERYKLLHILEFDSDRRRMSVIVQAPSGEKLLFAKGAESSILPKCIGGEIAKTRIHVDEFALKGLRTLCIA
YRQFTAKEYEDVDRRLFEARTALQHREEKLADAFQYIEKDLILLGATAVEDRLQDKVRETIEALRMAGIK
VWVLTGDKHETAVSVSLSCGHFHRTMNILELINQKSDSGCAEQLRQLARRITEDHVIQHGLVVDGTSLSL
ALREHEKLFMEVCRNCSAVLCCRMAPLQKAKVIRLIKISPEKPITLAVGDGANDVSMIQEAHVGIGIMGK
EGRQAARNSDYAIARFKFLSKLLFVHGHFYYIRIATLVQYFFYKNVCFITPQFLYQFYCLFSQQTLYDSV
YLTLYNICFTSLPVLIYSLVEQHIDPHVLQSKPTLYRDISKNGLLSIKAFLYWTVLGFSHAFIFFFGSYF
LVGKDTSLLGNGQMFGNWTFGTLVFTVMVITVTVKMALETHFWTWINHLVTWGSIIFYFIFSLFYGGILW
PFLGSQNMYFVFIQLLSSGSAWFAILLMVVTCLFIDVVKKVFDRQLHPTSTEKAQLAEAHSSVKCLDSVC
CFPGETPCASVGRMLERVIGRCSPNHISRLWNASDPFYTNDRSILTLSPMDSSTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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