NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2798.1 Public Homo sapiens 3 NICN1 24 110 108 CCDS HistoryNCBI Gene:84276Re-query CCDS DB by CCDS ID:2798.1Re-query CCDS DB by GeneID:84276See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2798.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273598.8 ENSP00000273598.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273598.8Link to Ensembl Protein Viewer:ENSP00000273598.4Re-query CCDS DB by Nucleotide ID:ENST00000273598Re-query CCDS DB by Protein ID:ENSP00000273598
Original member Current member EBI ENST00000423832.5 ENSP00000413115.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423832.5Link to Ensembl Protein Viewer:ENSP00000413115.1Re-query CCDS DB by Nucleotide ID:ENST00000423832Re-query CCDS DB by Protein ID:ENSP00000413115
Original member Current member EBI ENST00000615713.4 ENSP00000478287.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615713.4Link to Ensembl Protein Viewer:ENSP00000478287.1Re-query CCDS DB by Nucleotide ID:ENST00000615713Re-query CCDS DB by Protein ID:ENSP00000478287
Original member Current member EBI ENST00000638079.1 ENSP00000490120.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638079.1Link to Ensembl Protein Viewer:ENSP00000490120.1Re-query CCDS DB by Nucleotide ID:ENST00000638079Re-query CCDS DB by Protein ID:ENSP00000490120
Original member Current member EBI ENST00000638115.1 ENSP00000490296.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638115.1Link to Ensembl Protein Viewer:ENSP00000490296.1Re-query CCDS DB by Nucleotide ID:ENST00000638115Re-query CCDS DB by Protein ID:ENSP00000490296
Original member Current member NCBI NM_032316.3 NP_115692.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032316.3Link to Protein Sequence:NP_115692.1Re-query CCDS DB by Nucleotide ID:NM_032316Re-query CCDS DB by Protein ID:NP_115692Link to BLAST:NP_115692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115692.1 213 Q9BSH3-1 213 100% 0 0

Chromosomal Locations for CCDS 2798.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49424833 49424874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49424949 49425053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49425367 49425438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49425883 49425996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49426252 49426428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49429108 49429239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGTCCCGCGTTTTGGTGCCTTGCCATGTGAAAGGCTCCGTAGCCCTCCAGGTGGGCGACGTGCGGACCT
CCCAAGGCCGGCCTGGCGTGCTGGTCATCGATGTCACCTTCCCCAGCGTCGCTCCCTTCGAGTTGCAGGA
AATCACGTTTAAGAATTACTACACAGCTTTTTTGAGCATCCGTGTCCGTCAGTACACCTCAGCACACACA
CCTGCCAAGTGGGTGACCTGCCTGCGGGACTACTGCCTAATGCCTGACCCACACAGTGAGGAGGGAGCCC
AGGAGTATGTATCGCTGTTCAAGCATCAGATGCTGTGTGACATGGCTAGAATATCGGAGCTACGCCTGAT
TCTGCGGCAGCCATCACCACTGTGGCTGTCTTTCACAGTGGAGGAGCTGCAGATCTATCAGCAGGGACCA
AAGAGCCCCTCCGTGACCTTTCCCAAGTGGCTCTCCCACCCAGTGCCCTGTGAGCAACCTGCACTCCTCC
GTGAGGGTCTCCCAGACCCCAGCAGGGTATCCTCCGAGGTGCAGCAGATGTGGGCACTGACAGAGATGAT
CCGGGCCAGTCACACCTCCGCAAGGATCGGCCGCTTTGATGTGGATGGCTGTTATGACCTGAACTTGCTC
TCCTACACTTGA

Translation (213 aa):
MSRVLVPCHVKGSVALQVGDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSIRVRQYTSAHT
PAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQPSPLWLSFTVEELQIYQQGP
KSPSVTFPKWLSHPVPCEQPALLREGLPDPSRVSSEVQQMWALTEMIRASHTSARIGRFDVDGCYDLNLL
SYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH