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Report for CCDS26464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26464.1 Public Mus musculus 13 Bloc1s5 23 108 98 CCDS HistoryNCBI Gene:17828Re-query CCDS DB by CCDS ID:26464.1Re-query CCDS DB by GeneID:17828See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035899.7 ENSMUSP00000036614.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035899.7Link to Ensembl Protein Viewer:ENSMUSP00000036614.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035899Re-query CCDS DB by Protein ID:ENSMUSP00000036614
Original member Current member NCBI NM_139063.3 NP_620702.1 Accepted alive Link to Nucleotide Sequence:NM_139063.3Link to Protein Sequence:NP_620702.1Re-query CCDS DB by Nucleotide ID:NM_139063Re-query CCDS DB by Protein ID:NP_620702Link to BLAST:NP_620702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620702.1 185 Q8R015-1 185 100% 0 0

Chromosomal Locations for CCDS 26464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 38603849 38604028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38612643 38612701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38619090 38619219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38630993 38631075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38634936 38635041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGAGTGGCGGAGGCACCGAGACCCCTGTAGCGTGCGACGCCGCCCAGGGCGGCAAGAAGCGGGACTCAC
TGGGGACTCCGGGTGCGGCGCACCTCATTATCAAGGATCTTGGAGAGATTCATTCCAGGCTGCTGGATCA
CAGACCAGTTACCCAAGGTGAAATCCGTTACTTTGTAAAAGAATTTGAAGAAAAACGTGGCCTTCGAGAA
TTGCGCGTTCTTAAGAACTTGGAGAATACGATCCAGGAAACAAATGAGTGCCTGCTTCCCAAATGCAGAG
AGACCATGGAGTGCGGCCTGGGGGAGACCCTGCAGAGATTGCAAGCAGCTAACGACTCCATCTGCAGACT
CCAGCAGAGAGAACAGGAACGGAAAAAGGTGATTAATGACTACTTGACAGCTAGTGAGAAGCGTCGTCTG
GTCCAGTGGGAGGAGTTCGTGAGCGGACAGCCGCAGCGCAGAGCTGAGGTGGACGAGGAGCACAGAAGAG
CCGTGGAGAGGCTCCGAGAGCAGTATGCAGCAATGGAGAAGGACCTGGCCAAGTTTTCCACCTTTTAA

Translation (185 aa):
MSGGGTETPVACDAAQGGKKRDSLGTPGAAHLIIKDLGEIHSRLLDHRPVTQGEIRYFVKEFEEKRGLRE
LRVLKNLENTIQETNECLLPKCRETMECGLGETLQRLQAANDSICRLQQREQERKKVINDYLTASEKRRL
VQWEEFVSGQPQRRAEVDEEHRRAVERLREQYAAMEKDLAKFSTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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