NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49619.1 Public Mus musculus 15 Kcnq3 23 108 98 CCDS HistoryNCBI Gene:110862Re-query CCDS DB by CCDS ID:49619.1Re-query CCDS DB by GeneID:110862See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49619.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070256.8 ENSMUSP00000063380.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070256.8Link to Ensembl Protein Viewer:ENSMUSP00000063380.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070256Re-query CCDS DB by Protein ID:ENSMUSP00000063380
Original member Current member NCBI NM_152923.3 NP_690887.2 Accepted alive Link to Nucleotide Sequence:NM_152923.3Link to Protein Sequence:NP_690887.2Re-query CCDS DB by Nucleotide ID:NM_152923Re-query CCDS DB by Protein ID:NP_690887Link to BLAST:NP_690887.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690887.2 873 Q8K3F6 873 100% 0 0

Chromosomal Locations for CCDS 49619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 65995171 65995905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65997701 65997785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66000017 66000115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66002195 66002326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66004722 66004824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66005772 66005974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66016449 66016475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66020287 66020381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66021741 66021836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66023647 66023757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66025114 66025269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66028625 66028797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66030519 66030645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66031380 66031470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66285836 66286224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2622 nt):
ATGGGTCTCAAGGCTCGCAGGGCGGCGGGGGCGGCTGGCGGGGGCGGCGGCGAAGGGGGCGGCGGCGGCG
GCGGGGCCGCTAACCCTGCTGGAGGGGACTCGGCGGTGGCCGGCGACGAGGAGCGGAAAGTGGGGCTGGC
GCCAGGAGACGTGGAGCAAGTCACCTTGGCGCTAGGGGCCGGAGCCGACAAAGACGGGACCCTGCTGCTG
GAGGGCGGTGGCCGCGAAGAGGGGCAGAGGAGGACCCCGCAGGGCATCGGGCTCCTGGCAAAGACCCCCC
TGAGCCGCCCAGTCAAGAGGAACAACGCCAAGTACAGGCGCATCCAAACTTTGATCTATGACGCCCTGGA
GAGACCGCGGGGCTGGGCGCTGCTCTACCACGCGCTTGTGTTCCTGATTGTCCTGGGATGCTTGATTCTG
GCCGTGCTCACCACCTTCAAGGAATATGAGACTGTGTCTGGAGACTGGCTTTTGCTGCTGGAAACCTTTG
CTATTTTCATCTTTGGAGCTGAGTTTGCTTTGAGGATCTGGGCTGCAGGATGTTGCTGTCGATACAAAGG
CTGGCGTGGACGGCTAAAGTTTGCCAGGAAGCCCCTGTGCATGTTGGACATCTTCGTACTGATTGCCTCT
GTGCCAGTGGTTGCCGTGGGAAACCAGGGCAATGTCTTGGCCACCTCCCTGCGAAGCCTTCGCTTCCTGC
AGATCCTGCGCATGCTTCGAATGGATAGGAGGGGTGGCACCTGGAAGCTCCTGGGCTCGGCTATCTGTGC
CCACAGCAAAGAACTCATCACTGCCTGGTACATAGGCTTCCTGACACTCATCCTTTCTTCATTTCTTGTC
TACCTGGTGGAGAAGGATGTGCCAGAGATGGATGCCCAAGGAGAGGAAATGAAGGAGGAGTTTGAGACCT
ATGCAGATGCTCTGTGGTGGGGCCTGATCACACTGGCCACCATTGGTTATGGAGACAAGACACCTAAAAC
CTGGGAAGGACGTCTGATTGCTGCCACCTTTTCTTTAATCGGCGTCTCCTTTTTTGCCCTTCCGGCAGGC
ATCCTTGGCTCAGGACTGGCACTGAAGGTTCAGGAGCAGCACCGTCAGAAGCACTTTGAGAAGAGAAGGA
AGCCAGCTGCGGAACTCATCCAGGCTGCCTGGAGATATTATGCTACCAACCCCAACAGGTTGGATCTGGT
GGCAACCTGGAGATTTTATGAATCAGTTGTCTCTTTCCCATTCTTCAGGAAAGAACAACTGGAAGCAGCA
GCCAGCCAAAAGCTGGGTCTCTTGGATCGGGTTCGCCTTTCTAATCCTCGTGGTAGCAATACTAAAGGAA
AGCTATTTACCCCTCTGAATGTAGATGCCATAGAAGAAAGCCCTTCCAAAGAGCCAAAGCCTGTTGGCTT
AAACAATAAAGAGCGTTTCCGCACCGCCTTCCGCATGAAAGCCTACGCTTTCTGGCAGAGTTCTGAAGAT
GCTGGGACAGGCGACCCCATGGCAGAAGACAGGGGCTATGGGAATGACTTCCTCATTGAAGACATGATCC
CTACCCTAAAGGCTGCCATCCGAGCTGTCAGAATTCTACAGTTCCGTCTATATAAAAAAAAGTTCAAGGA
GACGTTGAGGCCTTATGATGTGAAAGATGTGATTGAGCAGTATTCGGCCGGACATCTTGACATGCTTTCC
AGGATAAAGTACCTACAGACAAGAATAGATATGATTTTCACCCCTGGACCTCCATCCACTCCAAAACATA
AGAAGTCTCAGAAAGGGTCAGCATTTACCTACCCATCCCAGCAGTCTCCAAGGAATGAACCATATGTAGC
CAGGGCAGCCACATCAGAAACTGAAGACCAAAGCATGATGGGGAAGTTTGTAAAAGTTGAAAGACAGGTT
CATGACATGGGGAAGAAACTGGACTTCCTCGTGGACATGCATATGCAGCATATGGAACGCTTACAGGTAC
ATGTCACTGAGTACTACCCAACTAAGGGGGCCTCCTCCCCAGCCGAAGGGGAGAAGAAAGAAGACAACAG
GTACTCTGATTTGAAAACCATCATCTGCAACTACTCAGAGACAGGGCCCCCTGACCCTCCTTACAGCTTC
CACCAGGTGCCCATCGACAGAGTTGGCCCTTACGGGTTTTTTGCACATGATCCTGTGAAACTGACCCGAG
GGGGACCCAGTTCTACAAAGGCTCAAGCTAACCTTCCCTCCTCGGGAAGTACATATGCAGAGAGGCCCAC
AGTCCTGCCCATCTTGACTCTTCTGGACTCATGTGTGAGCTACCACTCCCAGACAGAACTGCAAGGTCCC
TATTCGGACCACATCTCGCCCCGCCAGAGACGCAGCATCACTAGGGACAGTGATACACCTCTGTCCCTCA
TGTCCGTCAATCACGAGGAACTGGAGCGGTCTCCAAGTGGCTTCAGCATCTCACAAGACAGAGATGATTA
TGTATTTGGCCCCAGTGGGGGATCGAGCTGGATGAGGGAAAAGCGGTACCTGGCTGAAGGAGAAACGGAC
ACGGACACAGACCCCTTCACACCCAGTGGTTCCATGCCTATGTCATCCACTGGGGATGGTATTTCAGATT
CCATATGGACCCCTTCCAACAAGCCCACTTAA

Translation (873 aa):
MGLKARRAAGAAGGGGGEGGGGGGGAANPAGGDSAVAGDEERKVGLAPGDVEQVTLALGAGADKDGTLLL
EGGGREEGQRRTPQGIGLLAKTPLSRPVKRNNAKYRRIQTLIYDALERPRGWALLYHALVFLIVLGCLIL
AVLTTFKEYETVSGDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCMLDIFVLIAS
VPVVAVGNQGNVLATSLRSLRFLQILRMLRMDRRGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLV
YLVEKDVPEMDAQGEEMKEEFETYADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFFALPAG
ILGSGLALKVQEQHRQKHFEKRRKPAAELIQAAWRYYATNPNRLDLVATWRFYESVVSFPFFRKEQLEAA
ASQKLGLLDRVRLSNPRGSNTKGKLFTPLNVDAIEESPSKEPKPVGLNNKERFRTAFRMKAYAFWQSSED
AGTGDPMAEDRGYGNDFLIEDMIPTLKAAIRAVRILQFRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLS
RIKYLQTRIDMIFTPGPPSTPKHKKSQKGSAFTYPSQQSPRNEPYVARAATSETEDQSMMGKFVKVERQV
HDMGKKLDFLVDMHMQHMERLQVHVTEYYPTKGASSPAEGEKKEDNRYSDLKTIICNYSETGPPDPPYSF
HQVPIDRVGPYGFFAHDPVKLTRGGPSSTKAQANLPSSGSTYAERPTVLPILTLLDSCVSYHSQTELQGP
YSDHISPRQRRSITRDSDTPLSLMSVNHEELERSPSGFSISQDRDDYVFGPSGGSSWMREKRYLAEGETD
TDTDPFTPSGSMPMSSTGDGISDSIWTPSNKPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH