NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22598.1 Public Mus musculus 8 Elmo3 23 108 98 CCDS HistoryNCBI Gene:234683Re-query CCDS DB by CCDS ID:22598.1Re-query CCDS DB by GeneID:234683See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109375.3 ENSMUSP00000105000.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109375.3Link to Ensembl Protein Viewer:ENSMUSP00000105000.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109375Re-query CCDS DB by Protein ID:ENSMUSP00000105000
Original member NCBI NM_172760.3 NP_766348.3 Updated not alive Link to Nucleotide Sequence:NM_172760.3Link to Protein Sequence:NP_766348.3Re-query CCDS DB by Nucleotide ID:NM_172760Re-query CCDS DB by Protein ID:NP_766348
Current member NCBI NM_172760.4 NP_766348.3 Accepted alive Link to Nucleotide Sequence:NM_172760.4Link to Protein Sequence:NP_766348.3Re-query CCDS DB by Nucleotide ID:NM_172760Re-query CCDS DB by Protein ID:NP_766348Link to BLAST:NP_766348.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766348.3 720 Q8BYZ7-1 720 100% 0 0

Chromosomal Locations for CCDS 22598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105305752 105305829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105305967 105306007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105306115 105306187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105306378 105306428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105306596 105306765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105306854 105306953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105307039 105307190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105307288 105307366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105307463 105307513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105307595 105307717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105307802 105307933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105308034 105308135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105308232 105308340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105308449 105308585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105308672 105308835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105308922 105309034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105309114 105309218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105309325 105309407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105309493 105309579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105309665 105309877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGGCGCCCCCGCGGAATGTGGTGAAGATTGCTGTTCAGATGTCTGACGCCATCCCACAGCTTATCCAGC
TAGACCAGGCAAAGCCCCTGGCCACTGTACTGAAGGAGGTGTGTGACGCGTGGAGCCTGACTCATCCGGA
GCACTATGCCCTGCAGTTTGCTGATGGGCACAGGAAATACATCACAGAGAATAACCGCTTGGAGATCAAG
AATGGAAGCATCCTGTGTCTCAGCACTGCCCCAGATCTGAAGGCCCAGCAGCTACTGGGTAGACTGCAGA
ATACAAGTCGTGAAGGGTGCTGTGAAGTCCTGAGAAACCTGGTCCTGCTGGCCTCAGACATGACCTTTGC
CCAGGAGGTCATCAGTCGTGATGGGCTTCAGAAACTAAGCACCATCATTGAAAATGGGGATGACCTAGGG
GAGATGCTGGCCCTTGGTCTAAGGGCTTTCTTGGAGCTCATGGAACACGGTGTAGTGTCCTGGGAGACAC
TCAGCATCTCCTTTGTCAGGAAGGTGATATCTTATGTGAACATGAACCTGATGGATGCCTCTGTCCAGCC
CCTGGCTCTGAGACTGCTGGAGAGTGTGACCTTGAGCAGTCCTGCCCTGGGCCAGCTGGTGAAGAGTGAG
GTGCCACTGGATAGGCTGCTGGTGCACCTGCAAGTAATGAACCACCAGCTGCAAACCAAGGCCATGGCTC
TGTTGACGGCCCTGCTGCAGGGAGCCAGCCCCACTGAACGCAAGGAAATGCTTGACCACCTATGGAAGAA
GAATCTTCGCCAGTTCATCTACAAGAACATCATCCACAGTGCAACACCCATGGGTGACGAGATGGCTCAT
CACTTGTATGTGCTGCAGGCTCTTACCCTAGGGCTGCTGGAGCCACGGATGCGGACACCACTTGATCCCT
ACAGCCAGGAACAGCGGGACCAGCTGCAGGCTCTGCGCCAGGCAGCCTTTGAACCAGAGGGGGAGTCCTT
GGGCACAGGGCTCAGTGCAGACCGCCGCCGGTCTCTCTGTGTCCGAGAGTTCCGCAAGTTAGGCTTCTCT
AACAGCAACCCAGCCCAGGACCTGGAGCGTGTGCCCCCCGGCCTGCTGGCCCTGGACAATATGCTCTACT
TCTCCAGACATGCACCAAGTGCATACAGTCGGTTTGTGTTGGAGAACAGTAGCCGAGAGGACAAGCATGA
ATGCCCCTTTGCCCGGAGCAGCATCCAGCTGACAGCGTTGCTGTGTGAGCTGCTCCGTGTTGGGGAGCCT
TGCTCCGAGACAGCCCAGGACTTCTCGCCCATGTTCTTCAGCCAAGACCACAGTTTCCATGAGCTCTTCT
GTGTGGCTATCCAGCTACTGAATAAGACCTGGAAGGAGATGCGGGCAACACAGGAAGATTTTGACAAGGT
GATGCAAGTGGTTCGGGAGCAGCTGGCCCGTACCCTGGCTCTGAAGCCCACCTCCCTGGAGCTCTTTCGA
ACCAAAGTGAATGCCCTCACCTATGGGGAAGTGTTGAGGCTGCGGCAGACAGAGCGGCTGCACCAGGAGG
GCACGCTGGCCCCTCCTATACTGGAATTGCGAGAGAAACTGAAGCCAGAGCTCATGGGCTTAATCCGCCA
GCAGCGTTTGCTCCGACTCTGTGAAGGAATGCTCTTCCGCAAGATCAGCAGCCGGAGACGACAGGACAAG
CTATGGTTTTGCTGTTTATCCCCCAACCACAAAGTACTGCAGTATGGGGATGTGGAGGAGGGTGCCAAGC
CCCCTACCCTAGAAAGCCTACCTGAACAGCTCCCTGTGGCAGACATCAGGGCACTCCTAATGGGCAAGGA
CTGCCCCCATGTCCGGGAGAAGGGCTCTGGGAAGCAGAACAAGGACCTGTATGAGCTGGCTTTCTCCATC
AGCTATGACCACGGGGAGGAAGAAGCATACCTCAACTTCATTGCCCCCTCCAAACGGGATTTCTACCTGT
GGACAGACGGGCTAAGTGCCCTGCTGGGCAGTACCATGGGCAGTGAGCTGACTCGGCTAGACCTGGAGCA
GCTGCTCACTATGGAGACCAAGTTGCGGTTGTTGGAACTGGAGAACGTGCCCATTCCTGAGCAGCCTCCC
CCAGTACCCCCACCCCCTACCAACTTTAACTTCTGCTATGACTACAGCATCACTGAGCCGTGA

Translation (720 aa):
MAPPRNVVKIAVQMSDAIPQLIQLDQAKPLATVLKEVCDAWSLTHPEHYALQFADGHRKYITENNRLEIK
NGSILCLSTAPDLKAQQLLGRLQNTSREGCCEVLRNLVLLASDMTFAQEVISRDGLQKLSTIIENGDDLG
EMLALGLRAFLELMEHGVVSWETLSISFVRKVISYVNMNLMDASVQPLALRLLESVTLSSPALGQLVKSE
VPLDRLLVHLQVMNHQLQTKAMALLTALLQGASPTERKEMLDHLWKKNLRQFIYKNIIHSATPMGDEMAH
HLYVLQALTLGLLEPRMRTPLDPYSQEQRDQLQALRQAAFEPEGESLGTGLSADRRRSLCVREFRKLGFS
NSNPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSIQLTALLCELLRVGEP
CSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQEDFDKVMQVVREQLARTLALKPTSLELFR
TKVNALTYGEVLRLRQTERLHQEGTLAPPILELREKLKPELMGLIRQQRLLRLCEGMLFRKISSRRRQDK
LWFCCLSPNHKVLQYGDVEEGAKPPTLESLPEQLPVADIRALLMGKDCPHVREKGSGKQNKDLYELAFSI
SYDHGEEEAYLNFIAPSKRDFYLWTDGLSALLGSTMGSELTRLDLEQLLTMETKLRLLELENVPIPEQPP
PVPPPPTNFNFCYDYSITEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH