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Report for CCDS18012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18012.1 Public Mus musculus 4 Manea 23 108 98 CCDS HistoryNCBI Gene:242362Re-query CCDS DB by CCDS ID:18012.1Re-query CCDS DB by GeneID:242362See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041374.7 ENSMUSP00000038671.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041374.7Link to Ensembl Protein Viewer:ENSMUSP00000038671.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041374Re-query CCDS DB by Protein ID:ENSMUSP00000038671
Original member NCBI NM_172865.2 NP_766453.2 Updated not alive Link to Nucleotide Sequence:NM_172865.2Link to Protein Sequence:NP_766453.2Re-query CCDS DB by Nucleotide ID:NM_172865Re-query CCDS DB by Protein ID:NP_766453
Current member NCBI NM_172865.3 NP_766453.2 Accepted alive Link to Nucleotide Sequence:NM_172865.3Link to Protein Sequence:NP_766453.2Re-query CCDS DB by Nucleotide ID:NM_172865Re-query CCDS DB by Protein ID:NP_766453Link to BLAST:NP_766453.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766453.2 462 Q6NXH2 462 100% 0 0

Chromosomal Locations for CCDS 18012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 26327651 26328308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26329086 26329162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26336621 26336730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26340417 26340960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGCAAAATTTCGAAGAAGGACCTGCATCCTTTTGTCACTTTTTATTCTATTTATTTTTTCTCTGATGA
TGGGCTTAAAGATGCTGTGGCCAAACGCAGCATCCTTTGGACCTCCTTTTGGACTTGACCTCCTTCCAGA
ACTTCATCCACTAAATGCGCATTCGGGAAACAAAGCTGACTTCCAAAGGAGTGATAGAATCAACATGGAA
ACAAACACCAAGGCTTTAAAAGGCGCTGGCATGACTGTGCTGCCAGCCAAAGCCTCTGAGGTGAACCTGG
AAGAACTACCTCCTCTGAATTACTTTTTACATGCATTTTATTACAGTTGGTATGGAAATCCACAGTTTGA
TGGTAAATATATACACTGGAATCATCCGGTCCTGGAACACTGGGACCCTCGGATAGCCAAGAACTATCCA
CAAGGACAACATAGTCCTCCAGACGACATTGGCTCCAGTTTTTATCCTGAGTTAGGAAGTTACAGCTCTC
GAGACCCTTCTGTCATAGAAACTCACATGAAACAAATGCGCTCAGCCTCAATTGGAGTTCTGGCCCTGTC
TTGGTACCCACCTGATTCAAGGGATGACAATGGCGAAGCTACTGATCACTTGGTGCCAACCATTTTGGAT
AAAGCTCATAAATATAATCTGAAGGTCACTTTTCACATAGAGCCATATAGCAATCGAGATGATCAAAACA
TGCATCAAAATATCAAGTATATTATAGACAAATATGGAAACCATCCAGCCTTTTATAGATACAAGACCAG
GACTGGGCATTCTCTGCCCATGTTTTATGTCTATGATTCTTACATCACAAAGCCTACAATATGGGCCAAT
CTGTTAACACCCTCCGGATCTCAGAGTGTTCGCAGTTCTCCTTATGATGGATTGTTTATTGCACTTCTAG
TAGAAGAAAAGCATAAAAATGATATTCTTCAGAGTGGTTTTGATGGTATTTACACATATTTTGCCACAAA
TGGCTTTACATATGGCTCATCTCATCAGAATTGGAATAACCTGAAATCCTTTTGTGAAAAGAACAACTTG
ATGTTTATCCCAAGTGTAGGCCCAGGATACATAGATACAAGCATCCGACCATGGAACACTCAGAACACCC
GGAACAGAGTCAATGGGAAGTATTATGAAGTTGGTCTAAGTGCTGCACTCCAGACCCACCCCAGTTTAAT
TTCCATCACCTCTTTCAATGAGTGGCATGAAGGAACTCAAATTGAAAAGGCTGTCCCCAAAAGAACTGCT
AACACGATATACCTGGATTACCGGCCTCATAAGCCAAGTCTTTATCTAGAACTAACTCGAAAGTGGTCTG
AAAAATTCAGTAAGGAAAGAATGACGTATGCATTGGATCAACAGCAGCCTGCTTCATAA

Translation (462 aa):
MAKFRRRTCILLSLFILFIFSLMMGLKMLWPNAASFGPPFGLDLLPELHPLNAHSGNKADFQRSDRINME
TNTKALKGAGMTVLPAKASEVNLEELPPLNYFLHAFYYSWYGNPQFDGKYIHWNHPVLEHWDPRIAKNYP
QGQHSPPDDIGSSFYPELGSYSSRDPSVIETHMKQMRSASIGVLALSWYPPDSRDDNGEATDHLVPTILD
KAHKYNLKVTFHIEPYSNRDDQNMHQNIKYIIDKYGNHPAFYRYKTRTGHSLPMFYVYDSYITKPTIWAN
LLTPSGSQSVRSSPYDGLFIALLVEEKHKNDILQSGFDGIYTYFATNGFTYGSSHQNWNNLKSFCEKNNL
MFIPSVGPGYIDTSIRPWNTQNTRNRVNGKYYEVGLSAALQTHPSLISITSFNEWHEGTQIEKAVPKRTA
NTIYLDYRPHKPSLYLELTRKWSEKFSKERMTYALDQQQPAS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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