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Report for CCDS51252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51252.1 Public Mus musculus 4 Cimap2 23 108 98 CCDS HistoryNCBI Gene:242602Re-query CCDS DB by CCDS ID:51252.1Re-query CCDS DB by GeneID:242602See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067387.8 ENSMUSP00000066732.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067387.8Link to Ensembl Protein Viewer:ENSMUSP00000066732.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000067387Re-query CCDS DB by Protein ID:ENSMUSP00000066732
Original member Current member EBI ENSMUST00000106788.1 ENSMUSP00000102400.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106788.1Link to Ensembl Protein Viewer:ENSMUSP00000102400.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106788Re-query CCDS DB by Protein ID:ENSMUSP00000102400
Original member Current member EBI ENSMUST00000189032.6 ENSMUSP00000139868.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189032.6Link to Ensembl Protein Viewer:ENSMUSP00000139868.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189032Re-query CCDS DB by Protein ID:ENSMUSP00000139868
Original member NCBI NM_183182.3 NP_899005.2 Updated not alive Link to Nucleotide Sequence:NM_183182.3Link to Protein Sequence:NP_899005.2Re-query CCDS DB by Nucleotide ID:NM_183182Re-query CCDS DB by Protein ID:NP_899005
Current member NCBI NM_183182.4 NP_899005.2 Accepted alive Link to Nucleotide Sequence:NM_183182.4Link to Protein Sequence:NP_899005.2Re-query CCDS DB by Nucleotide ID:NM_183182Re-query CCDS DB by Protein ID:NP_899005Link to BLAST:NP_899005.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899005.2 414 A2AVQ5 414 100% 0 0

Chromosomal Locations for CCDS 51252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106591615 106591687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106607289 106607422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106610400 106610525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106611413 106611574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106613109 106613252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106613368 106613502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106615035 106615157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106615339 106615503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106615902 106615989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106617125 106617219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGAGACCTCGCACCCACGGCGCCCCCCCGCGCAACATCATGTCCACCATCCCCAAGTGGTTCAAAGGGG
CGCCCTTTGGGGTGCAGAGCCACAGGTTTGATGTCTCCGCTGTCTATCCCAACCAGAAGAAATTCAGCAC
CTTCACAGAGGCCCCATACTCCAGACATCATTCGGTGGAACTGTCCCACATAGGACCTGGGACCTATAAC
TCCAAGGATACCTGCTTCAGCAAGAAGTTCCTGGAACAGAAGTTGGGCTCAGGATGGTCCCAGGCCCACG
AAGCCACTCGGCTGACCCAGCTACCCCACTTCCACTACCAGGCCATCAAGAAGGAAAAAGAGCAGCAGGT
GCACAAGCGTGGCCCTGGCTCCTACAACATCAAAGACTTCATAACTGAGCTGCAGAAGAAACCACAGAGC
AAACGGGGGCTGCTCAGCTCTGGGGAGACACGTTTCCGAGGTTTTATTGGGAATTATTATCCTGGCCCTG
GAAATTATGGGGAGAAGGGGAACCCGTACACACAGCTGGAGGAGAAGGCCTGGAACCGCTCACATTCTGA
CGGCCTGATGTGTAGAGTGTCTAACAAGCCACCCTTGTTTCATCAGGGCAGTGGCCTGGGACCTGGTACC
TACACCATCAAAAGCGATCTTGAGACCTTTGTGAAAAAGTCCACTGGTAATCGTGGCCCCTATGACATTT
TCTCTGGTGAACGGAGCAGTCCTTTGCCCTATGGACATTACTCTGTGCAGAAAATGAAGCCCAAGGAACT
GACAGATTACAAGAGCTTTCTGGACGAAATGAACTCACAACACAAGAAGAAACAAGGGGTTTTCTCGAAA
TATCCCCGAGATCCGAAACACCCCACAGAGAGAATTTTCTGGACAACCCTTAGTCAGTGCCCCAAAAATA
TGGATATAGCTGGCCCTGGTTCTTGGCTTCCTCATGAGACGGAACAGAAACATGTCAACCGGCCACCGTT
CCTCCTGGCCTCCAAACGGTGCGGCCTAAAGGCCTACCAGATGATTTTGGGAACCTGGAACCCAGTTGGC
GTAGGCCGCTATCTCAACACCACGCTGATGGAGTCCATAGACCGAAGGCAGCGATACCGTTCTCTGTACA
TGAGTGAGCCCAAGCGATACCTGCAAGACCTAACCCGAGACAGACTCATGCAGAAACGGATTACACCTAT
TACGAAGGGCAAGTGCCGTCCAACTGTGGACTACAATTCAGATCCTACTCCTTAA

Translation (414 aa):
MRPRTHGAPPRNIMSTIPKWFKGAPFGVQSHRFDVSAVYPNQKKFSTFTEAPYSRHHSVELSHIGPGTYN
SKDTCFSKKFLEQKLGSGWSQAHEATRLTQLPHFHYQAIKKEKEQQVHKRGPGSYNIKDFITELQKKPQS
KRGLLSSGETRFRGFIGNYYPGPGNYGEKGNPYTQLEEKAWNRSHSDGLMCRVSNKPPLFHQGSGLGPGT
YTIKSDLETFVKKSTGNRGPYDIFSGERSSPLPYGHYSVQKMKPKELTDYKSFLDEMNSQHKKKQGVFSK
YPRDPKHPTERIFWTTLSQCPKNMDIAGPGSWLPHETEQKHVNRPPFLLASKRCGLKAYQMILGTWNPVG
VGRYLNTTLMESIDRRQRYRSLYMSEPKRYLQDLTRDRLMQKRITPITKGKCRPTVDYNSDPTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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