NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43566.1 Public Homo sapiens 7 BBS9 24 110 108 CCDS HistoryNCBI Gene:27241Re-query CCDS DB by CCDS ID:43566.1Re-query CCDS DB by GeneID:27241See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43566.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242067.11 ENSP00000242067.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242067.11Link to Ensembl Protein Viewer:ENSP00000242067.6Re-query CCDS DB by Nucleotide ID:ENST00000242067Re-query CCDS DB by Protein ID:ENSP00000242067
Original member Current member NCBI NM_001348036.1 NP_001334965.1 Accepted alive Link to Nucleotide Sequence:NM_001348036.1Link to Protein Sequence:NP_001334965.1Re-query CCDS DB by Nucleotide ID:NM_001348036Re-query CCDS DB by Protein ID:NP_001334965Link to BLAST:NP_001334965.1
Original member Current member NCBI NM_198428.3 NP_940820.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198428.3Link to Protein Sequence:NP_940820.1Re-query CCDS DB by Nucleotide ID:NM_198428Re-query CCDS DB by Protein ID:NP_940820Link to BLAST:NP_940820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334965.1 887 Q3SYG4-1 887 100% 0 0
NP_940820.1 887 Q3SYG4-1 887 100% 0 0

Chromosomal Locations for CCDS 43566.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 33146253 33146364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33152701 33152851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33155638 33155702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33177478 33177591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33257236 33257410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33264290 33264374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33273012 33273195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33273827 33273956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33336441 33336622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33340897 33340973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33344581 33344634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33349068 33349170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33351219 33351323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33352859 33352873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33357855 33357995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33367767 33367862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33383666 33383838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33387992 33388144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33505463 33505645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33533954 33534176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33604865 33604975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33605195 33605226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGTCTTTATTTAAAGCCCGTGATTGGTGGTCTACTATTCTGGGAGATAAAGAAGAATTTGATCAAGGCT
GTTTGTGTCTGGCTAATGTTGACAATAGTGGAAATGGACAAGATAAAATAATTGTGGGTAGCTTTATGGG
ATACCTAAGGATCTTTAGCCCCCATCCTGCAAAAACAGGAGATGGAGCTCAAGCCGAAGATTTGCTTCTA
GAAGTGGATCTACGAGATCCAGTACTTCAAGTGGAAGTAGGAAAGTTTGTTTCAGGTACCGAAATGCTAC
ATTTGGCTGTGTTACATTCTAGAAAACTTTGTGTCTACTCTGTCTCAGGAACCTTGGGTAATGTGGAACA
TGGGAACCAATGTCAGATGAAATTGATGTATGAACATAATCTTCAGAGAACAGCCTGCAATATGACCTAT
GGATCATTTGGTGGTGTAAAAGGTCGAGATTTAATTTGCATCCAGTCTATGGATGGGATGCTGATGGTAT
TTGAGCAGGAGAGCTATGCTTTTGGAAGATTTCTCCCTGGCTTTCTTCTGCCTGGTCCTCTTGCCTACAG
TTCCCGTACAGATTCCTTCCTTACTGTCTCTTCCTGCCAACAAGTGGAAAGTTATAAGTACCAGGTACTT
GCTTTTGCAACAGATGCAGATAAAAGGCAGGAGACTGAACAGCAAAAACTTGGTTCTGGAAAAAGACTAG
TTGTGGATTGGACTCTAAATATTGGAGAGCAAGCCCTTGACATATGTATTGTCTCTTTCAATCAGTCGGC
ATCCTCTGTTTTTGTTCTTGGTGAGAGAAACTTTTTTTGCCTTAAGGATAATGGACAAATTCGATTCATG
AAGAAGCTTGATTGGAGCCCAAGTTGTTTTCTGCCATATTGCTCAGTTTCTGAAGGAACAATAAATACTT
TGATTGGAAATCATAATAACATGCTGCATATTTATCAAGATGTGACACTGAAGTGGGCCACCCAACTTCC
CCACATTCCTGTAGCAGTAAGAGTGGGCTGTTTGCATGATTTAAAGGGAGTGATAGTCACTCTGAGTGAT
GATGGTCACTTGCAGTGTTCATACCTGGGGACAGATCCTTCTCTGTTCCAAGCTCCAAACGTTCAATCTC
GAGAACTAAACTATGATGAACTTGATGTAGAAATGAAAGAACTTCAGAAAATCATCAAAGATGTTAACAA
ATCACAAGGTGTTTGGCCCATGACTGAGAGAGAAGATGACTTGAACGTTTCTGTCGTGGTTTCTCCTAAC
TTTGATTCAGTTTCTCAAGCGACCGATGTTGAGGTGGGAACTGACCTTGTCCCTTCTGTCACGGTGAAGG
TCACACTGCAGAACAGAGTGATATTGCAAAAAGCCAAATTATCAGTCTACGTGCAACCACCATTAGAATT
GACTTGTGATCAGTTCACCTTTGAATTTATGACACCAGATTTGACTAGAACAGTAAGCTTTTCTGTTTAT
CTGAAAAGAAGTTATACACCATCAGAATTGGAAGGAAATGCTGTTGTTTCTTATTCCAGACCAACAGATC
GAAATCCTGATGGCATTCCGCGAGTTATCCAATGTAAATTTAGACTTCCCCTAAAGTTAATTTGCCTACC
AGGTCAGCCTTCAAAAACTGCAAGCCACAAAATTACTATTGATACCAACAAATCTCCAGTCAGTCTTCTT
AGTCTCTTCCCAGGTTTTGCCAGTCAGTCAGATGATGATCAGGTGAATGTAATGGGTTTTCACTTCTTAG
GAGGTGCTCGAATTACTGTTCTTGCTTCCAAAACTTCTCAACGATATCGCATTCAGAGTGAACAATTTGA
AGATCTTTGGCTCATAACCAATGAGCTTATTCTTCGCCTTCAAGAATATTTTGAAAAACAGGGAGTCAAA
GATTTTGCATGTTCTTTTTCGGGATCTATACCCCTTCAAGAATATTTTGAGTTGATTGATCATCATTTTG
AGCTACGGATAAATGGTGAAAAATTAGAAGAACTCTTATCTGAGAGAGCTGTACAATTTCGGGCCATTCA
ACGCCGGCTACTAGCAAGATTCAAAGATAAAACTCCTGCCCCTCTTCAACACCTGGACACCTTGTTAGAT
GGAACCTACAAGCAGGTAATTGCTCTAGCAGATGCAGTGGAGGAAAACCAAGGCAATCTGTTCCAGTCAT
TCACCAGGCTGAAGAGTGCCACCCATTTGGTGATTCTGCTGATCGCGCTGTGGCAGAAGCTTAGTGCTGA
CCAGGTTGCTATTCTGGAAGCGGCATTTCTGCCGCTACAAGAAGACACTCAAGAATTGGGCTGGGAAGAA
ACGGTGGATGCCGCCATTTCCCACCTGTTGAAGACTTGCCTGTCGAAGAGTTCTAAGGAGCAGGCTTTGA
ACCTCAACAGCCAGCTGAACATACCCAAAGACACAAGCCAACTGAAGAAACATATCACCTTGCTCTGCGA
TAGATTATCCAAAGGTGGCCGTCTCTGCCTAAGTACCGATGCAGCAGCCCCACAGACCATGGTCATGCCA
GGTGGTTGTACTACAATCCCAGAGTCAGACCTAGAAGAAAGATCAGTAGAACAAGACTCTACAGAACTGT
TTACCAACCACAGACATCTCACTGCAGAGACACCCAGGCCTGAAGTTTCACCCCTCCAAGGAGTCTCGGA
ATAA

Translation (887 aa):
MSLFKARDWWSTILGDKEEFDQGCLCLANVDNSGNGQDKIIVGSFMGYLRIFSPHPAKTGDGAQAEDLLL
EVDLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQCQMKLMYEHNLQRTACNMTY
GSFGGVKGRDLICIQSMDGMLMVFEQESYAFGRFLPGFLLPGPLAYSSRTDSFLTVSSCQQVESYKYQVL
AFATDADKRQETEQQKLGSGKRLVVDWTLNIGEQALDICIVSFNQSASSVFVLGERNFFCLKDNGQIRFM
KKLDWSPSCFLPYCSVSEGTINTLIGNHNNMLHIYQDVTLKWATQLPHIPVAVRVGCLHDLKGVIVTLSD
DGHLQCSYLGTDPSLFQAPNVQSRELNYDELDVEMKELQKIIKDVNKSQGVWPMTEREDDLNVSVVVSPN
FDSVSQATDVEVGTDLVPSVTVKVTLQNRVILQKAKLSVYVQPPLELTCDQFTFEFMTPDLTRTVSFSVY
LKRSYTPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASHKITIDTNKSPVSLL
SLFPGFASQSDDDQVNVMGFHFLGGARITVLASKTSQRYRIQSEQFEDLWLITNELILRLQEYFEKQGVK
DFACSFSGSIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLARFKDKTPAPLQHLDTLLD
GTYKQVIALADAVEENQGNLFQSFTRLKSATHLVILLIALWQKLSADQVAILEAAFLPLQEDTQELGWEE
TVDAAISHLLKTCLSKSSKEQALNLNSQLNIPKDTSQLKKHITLLCDRLSKGGRLCLSTDAAAPQTMVMP
GGCTTIPESDLEERSVEQDSTELFTNHRHLTAETPRPEVSPLQGVSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH