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Report for CCDS33066.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33066.2 Under review, update Homo sapiens 19 TPRX1 24 110 108 CCDS HistoryNCBI Gene:284355Re-query CCDS DB by CCDS ID:33066.2Re-query CCDS DB by GeneID:284355See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33066.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535759.2 ENSP00000438832.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535759.2Link to Ensembl Protein Viewer:ENSP00000438832.1Re-query CCDS DB by Nucleotide ID:ENST00000535759Re-query CCDS DB by Protein ID:ENSP00000438832
Original member Current member NCBI NM_198479.3 NP_940881.3 Pending alive Link to Nucleotide Sequence:NM_198479.3Link to Protein Sequence:NP_940881.3Re-query CCDS DB by Nucleotide ID:NM_198479Re-query CCDS DB by Protein ID:NP_940881Link to BLAST:NP_940881.3

Chromosomal Locations for CCDS 33066.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47801775 47802980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47803504 47803673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47818468 47818538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47818972 47819051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGATGAAGCTGGAAACCATCATTCTGAGCAAACTATCACAAGGACAGAAAACCAAACACCGCATGCTC
TCGCTCATAGGAGGATGGGGCCCTGTCTGTCTTGTTCTCAGCTGTATTCCCAGTACCTAGGACTGTCCCA
GACACACAGCAGCCCTCCCCTGGCCCTGGACCCTCCAAGGAGACAGCGGCAGGAGCGCACGGTCTACACT
GAAAGCCAGCAGAAAGTGCTAGAATTTTACTTTCAGAAGGACCAGTACCCGAACTACGACCAGCGACTGA
ATCTGGCGGAGATGCTCAGCCTCAGGGAGCAACAGCTGCAGGTGTGGTTCAAGAATCGCCGCGCCAAACT
AGCTCGGGAGCGGCGGCTCCAGCAGCAGCCCCAGCGCGTCCCTGGGCAGAGAGGCCGAGGAGCCCGCGCT
GCGCCCCTAGTCCCTGCAGCCTCTGCCTCCGCACCTCAGCGGGGCCCCTCGGGAATCCTTCCAGCGGCGG
AACCCACGATCTGCAGCCTCCACCAGGCCTGGGGTGGCCCTGGGTGCAGAGCCCAGAAGGGCATCCCAGC
TGCCCTGAGTCCAGGCCCTGGCCCGATCCCTGCCCCAATCCCAGGCCCAGCCCAGATCCCAGGCCCACTC
CCTGGCTCAATTCCAGGCCCAATTCCAGGCCCAGCTCAGATCCCAAGCCCGATCCCAGCCCCAATCCCAG
GCCCAATTTCAGGCCCAGTCCAGATCCCAGGCCCATTCCGTGGCCCAATCCCAGGCCCAATTTCAGGCCC
AGCCCCGATCCCAGGCCCAATCTCAGGCCCATTCTCAGGCCCAAACCCAGGCCCGATCCCAGGCCCAAAC
CCAGGCCCGATCCCAGGCCCAATCTCAGGCCCGATCCCAGGCCCAATCTCAGTCCCGATCCCAGGCCCGA
TCCCAGGCCCAATCTCAGGCCCAATCTCAGGCCCAAACCCAGGCCCGATCCCAGGCCCAATCCCAGGCCC
AATCTCAGGCCCGAACCCAGGCCCGATCCCAGGCCCAATCTCAGGCCCGAACCCAGGCCTGATCCCAGGC
CCAATCCCAGGCCCAATCTCAGGCCCAGGCCCAATTATAGGCCCGATTCCCAGCCCAGCCCAGATCCCAG
GCCCAGGCAGACTCCAAGGCCCAGGTCCCATCTTAAGTCCTGGCCGGATGCGAAGCCCTGGCTCACTTCC
AGGCCTAGCCCCGATTTTAGGCCCAGGCTCAGGCCCAGGCTCAGGCTCAGTCCCAGCTCCAATCCCAGGC
CCAGGATCACTCCCAGCCCCAGCCCCCTTATGGCCTCAGAGCCCCGATGCCTCCGACTTCTTGCCAGACA
CCCAGTTATTCCCTCACTTCACAGAGCTGCTCCTACCCCTAGACCCCTTGGAGGGATCCTCAGTCTCCAC
CATGACCTCTCAGTACCAAGAAGGGGATGACTCTATGGGCAAAAAACACTCAGGGTCTCAGCCCCAAGAG
GAGGGTGGCTCTGTGAATGAAAATCACTCAGGCCCCAGGTTATTACTGGATTTATAG

Translation (508 aa):
MDEAGNHHSEQTITRTENQTPHALAHRRMGPCLSCSQLYSQYLGLSQTHSSPPLALDPPRRQRQERTVYT
ESQQKVLEFYFQKDQYPNYDQRLNLAEMLSLREQQLQVWFKNRRAKLARERRLQQQPQRVPGQRGRGARA
APLVPAASASAPQRGPSGILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPL
PGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPN
PGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPG
PIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPG
PGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPLDPLEGSSVSTMTSQYQEGDDSMGKKHSGSQPQE
EGGSVNENHSGPRLLLDL


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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