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Report for CCDS94168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94168.1 Public Homo sapiens 7 LHFPL3 24 110 108 CCDS HistoryNCBI Gene:375612Re-query CCDS DB by CCDS ID:94168.1Re-query CCDS DB by GeneID:375612See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94168.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424859.7 ENSP00000393128.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000424859.7Link to Ensembl Protein Viewer:ENSP00000393128.2Re-query CCDS DB by Nucleotide ID:ENST00000424859Re-query CCDS DB by Protein ID:ENSP00000393128
Original member Current member NCBI NM_199000.3 NP_945351.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199000.3Link to Protein Sequence:NP_945351.1Re-query CCDS DB by Nucleotide ID:NM_199000Re-query CCDS DB by Protein ID:NP_945351Link to BLAST:NP_945351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945351.1 236 Q86UP9 236 100% 0 0

Chromosomal Locations for CCDS 94168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104328780 104329224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104736675 104736911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104906187 104906215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGCCCGGAGCCGCCGCCGCTGCCGCCGCCGCCGCCGCCGCGATGCTCCCGGCTCAGGAGGCTGCCAAGC
TGTACCACACCAACTATGTGCGGAACTCGCGGGCCATCGGCGTGCTGTGGGCCATCTTCACCATCTGCTT
TGCCATCGTCAACGTGGTGTGCTTCATCCAGCCCTACTGGATAGGCGACGGCGTGGACACCCCGCAAGCC
GGCTATTTCGGGCTCTTCCACTACTGCATCGGCAACGGCTTCTCCCGGGAGCTGACCTGCAGGGGCAGCT
TCACGGACTTCTCCACGCTGCCCTCGGGCGCCTTCAAAGCCGCCTCCTTCTTTATCGGCCTCTCCATGAT
GCTCATCATTGCCTGCATCATTTGCTTTACCCTCTTCTTCTTCTGCAACACGGCCACTGTGTACAAGATA
TGTGCCTGGATGCAGCTCACCTCCGCTGCCTGCCTTGTGCTTGGCTGTATGATTTTCCCTGATGGCTGGG
ACTCAGATGAAGTAAAACGGATGTGTGGAGAAAAGACAGACAAGTACACTCTTGGGGCTTGCTCAGTCCG
CTGGGCATACATCCTGGCTATTATTGGAATTTTGGATGCCCTGATCCTCTCATTTCTAGCATTTGTGCTT
GGTAATCGACAAGACAGCTTGATGGCAGAGGAACTGAAGGCAGAAAACAAAGTTCTGCTAAGCCAATATT
CTCTAGAATGA

Translation (236 aa):
MPGAAAAAAAAAAAMLPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYWIGDGVDTPQA
GYFGLFHYCIGNGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCNTATVYKI
CAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAIIGILDALILSFLAFVL
GNRQDSLMAEELKAENKVLLSQYSLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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