NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18729.1 Public Mus musculus 4 Eya3 23 108 98 CCDS HistoryNCBI Gene:14050Re-query CCDS DB by CCDS ID:18729.1Re-query CCDS DB by GeneID:14050See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081726.12 ENSMUSP00000080425.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081726.12Link to Ensembl Protein Viewer:ENSMUSP00000080425.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081726Re-query CCDS DB by Protein ID:ENSMUSP00000080425
Original member NCBI NM_210071.2 NP_997592.1 Updated not alive Link to Nucleotide Sequence:NM_210071.2Link to Protein Sequence:NP_997592.1Re-query CCDS DB by Nucleotide ID:NM_210071Re-query CCDS DB by Protein ID:NP_997592
Current member NCBI NM_210071.3 NP_997592.1 Accepted alive Link to Nucleotide Sequence:NM_210071.3Link to Protein Sequence:NP_997592.1Re-query CCDS DB by Nucleotide ID:NM_210071Re-query CCDS DB by Protein ID:NP_997592Link to BLAST:NP_997592.1

Chromosomal Locations for CCDS 18729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132656756 132656788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132661895 132661938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132667155 132667234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132670189 132670255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132672896 132673032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132689705 132689790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132692962 132693145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132694747 132694883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132699030 132699113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132701021 132701110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132704352 132704410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132706963 132707123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132709945 132710059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132711842 132711963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132719212 132719312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132721279 132721359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGAAGAAGAGCAAGACCTACCAGAGCAACCGGTGAAAAAAGCCAAGATGCAGGAACCAAGAGAACAGA
CTTTAAGTCAAGTAAACAACCCAGATGCCAGTGATGAGAAGCCTGAGACATCCAGCCTTGCGTCAAATCT
CAGCATGTCAGAGGAAATTATGACATGCACCGATTACATCCCTCGCTCATCCAATGATTATACCTCACAA
ATGTATTCTGCAAAACCTTATGCACACATCCTCTCAGTTCCTGTTTCGGAAACCACTTATCCTGGGCAGA
CTCAGTACCAGACACTGCAGCAATCTCAACCCTACGCTGTCTACCCTCAGGCAACCCAAACTTACGGACT
ACCTCCTTTCGCTTCAAGCACAAATGCCAGCCTGATACCCACTTCATCTGCAATTGCCAATATTCCAGCA
GCAGCTGTGGCCAGCATCTCAAACCAGGATTATCCCACCTATACTATTCTTGGACAGAATCAGTACCAGG
CCTGCTACCCCAGTTCCAGCTTTGGAGTCACAGGTCAGACTAACAGTGATGCTGAGACCACAACATTAGC
AGCTACAACATACCAGACGGAGAAGCCTAGTGCTATGGTGCCTGCACCAGCCACACAGAGGCTTCCCTCC
GACTCCTCTGCAAGCCCACCTTTGTCCCAGACTACACCAAATAAAGATGCTGATGATCAGGCCAGGAAAA
ACATGACTGTCAAGAACCGGGGCAAGAGGAAAGCTGATGCCAGCTCTTCCCAGGACAGTGAATTGGAACG
GGTATTTCTCTGGGACTTGGACGAAACCATCATCATCTTTCATTCCCTTCTCACTGGATCCTATGCTCAG
AAGTATGGAAAGGACCCAACAGTAGTAATTGGCTCAGGTTTAACCATGGAAGAAATGATTTTTGAAGTGG
CTGATACACATCTATTTTTCAATGACTTAGAGGAGTGTGACCAGGTGCATGTGGAAGATGTGGCTTCTGA
TGACAATGGCCAGGATTTGAGCAACTACAGTTTCTCCACAGATGGTTTCAGTGGTTCAGGAGGCAGTGGT
AGCCACGGCTCATCTGTGGGCGTTCAGGGAGGTGTGGACTGGATGAGGAAACTGGCCTTTCGCTACCGAA
AAGTGAGGGAAATCTACGACAAGCATAAAAGCAATGTGGGTGGCCTCCTCAGCCCCCAGAGGAAGGAAGC
ACTGCAGAGACTCAGAGCAGAGATCGAGGTGCTGACGGACTCCTGGTTAGGAACTGCGCTCAAGTCCTTG
CTTCTCATCCAGTCTCGAAAGAACTGTGCGAATGTTCTGATCACTACCACGCAGTTGGTTCCAGCCCTGG
CCAAGGTTCTCCTGTATGGACTAGGAGAGATATTTCCTATTGAAAACATCTACAGTGCTACCAAAATCGG
TAAGGAGAGCTGCTTTGAGAGAATTGTTTCGAGGTTTGGGAAAAAAGTCACATATGTAGTGATTGGAGAT
GGACGAGATGAAGAAATTGCAGCCAAGCAGCACAACATGCCCTTCTGGAGGATCACAAACCACGGAGATC
TGGTGTCCCTGCACCAGGCTTTAGAGCTTGACTTCCTCTGA

Translation (526 aa):
MEEEQDLPEQPVKKAKMQEPREQTLSQVNNPDASDEKPETSSLASNLSMSEEIMTCTDYIPRSSNDYTSQ
MYSAKPYAHILSVPVSETTYPGQTQYQTLQQSQPYAVYPQATQTYGLPPFASSTNASLIPTSSAIANIPA
AAVASISNQDYPTYTILGQNQYQACYPSSSFGVTGQTNSDAETTTLAATTYQTEKPSAMVPAPATQRLPS
DSSASPPLSQTTPNKDADDQARKNMTVKNRGKRKADASSSQDSELERVFLWDLDETIIIFHSLLTGSYAQ
KYGKDPTVVIGSGLTMEEMIFEVADTHLFFNDLEECDQVHVEDVASDDNGQDLSNYSFSTDGFSGSGGSG
SHGSSVGVQGGVDWMRKLAFRYRKVREIYDKHKSNVGGLLSPQRKEALQRLRAEIEVLTDSWLGTALKSL
LLIQSRKNCANVLITTTQLVPALAKVLLYGLGEIFPIENIYSATKIGKESCFERIVSRFGKKVTYVVIGD
GRDEEIAAKQHNMPFWRITNHGDLVSLHQALELDFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH